Candidatus Electrothrix laxa: KKHLCK_13345
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Entry
KKHLCK_13345 CDS
T10500
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
elax Candidatus Electrothrix laxa
Pathway
elax03030
DNA replication
elax03410
Base excision repair
elax03420
Nucleotide excision repair
elax03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
elax00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KKHLCK_13345 (ligA)
03410 Base excision repair
KKHLCK_13345 (ligA)
03420 Nucleotide excision repair
KKHLCK_13345 (ligA)
03430 Mismatch repair
KKHLCK_13345 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
elax03032
]
KKHLCK_13345 (ligA)
03400 DNA repair and recombination proteins [BR:
elax03400
]
KKHLCK_13345 (ligA)
Enzymes [BR:
elax01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KKHLCK_13345 (ligA)
DNA replication proteins [BR:
elax03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KKHLCK_13345 (ligA)
DNA repair and recombination proteins [BR:
elax03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KKHLCK_13345 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KKHLCK_13345 (ligA)
MMR (mismatch excision repair)
DNA ligase
KKHLCK_13345 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KKHLCK_13345 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
PTCB-BRCT
HHH_5
DNA_ligase_ZBD
BRCT_2
HHH
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
CAK8723858
LinkDB
All DBs
Position
1:3181596..3183644
Genome browser
AA seq
682 aa
AA seq
DB search
MSSKVKMDNQQAEKRLDDLRVQITRHAHQYYVLDDPLISDGEYDRMFRELLDLEEQFPEL
LTPDSPSLRVGGEPLDAFAEAAHAVPMLSLDNVFNTQELLSFEEKIQRYLQSTAQPTYLA
EPKLDGLAVELIYENGLLVQGSTRGNGLVGENITAQLQTVQVIPLRLTAKEGNEGGSIPE
KLVVRGEVFLPRKAFLQLNEQRPEQGKALFANPRNAAAGSLRQLDPKVTASRSLNFYVYG
VADVEATPCADLEELFSWLAHLGFPVNPLIKFCPTLAEVEKQYQHLQTIRHELEYEIDGM
VIKVADFALQQRLGNTTRAPRWATAWKFPATQATTVMTGVDFQVGRTGAITPVALLEPVE
VEGVIVRRATLHNQDEIERKGLMIGDTVLIQRAGDVIPEIIKPITEQRTGEELPLIFPTQ
CPICTAPLQRPEGEAITRCVSLLCPAQQLQRMIYFVGKAGLDIDGFGRKNVEQLMEVGLI
QEIPDIFRLPKEQLAVLDGWGEKSAEKLLLAIAEATHPTLSRFIGALGIRYVGEMTSELL
TRHFSTLDDLLVAKKDDLLAVEGIGEQAAMSLIEYFANSENREMIETLLDLGLTIETVIQ
GNSENNPLEGAIFLFTGTLTQMSRNEAKQLVKDLGGRVVSGLSKKVTHLVAGEKAGSKLK
KAAEMGVTVVDEEAFLGIVGRM
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtaaagtgaaaatggataatcagcaggcagaaaaacgcctggacgatctgcgt
gtacagatcacccggcatgcgcatcagtattatgtcttggacgatccgctcatctctgac
ggtgaatatgatcgaatgtttcgggaactgctcgacttggaagagcagtttccggagctg
ctcaccccggattcaccgagcctgcgggttggtggtgagccgcttgatgcctttgcagag
gctgcccatgccgtgcccatgcttagcttggataacgtttttaacactcaggagcttctg
agctttgaggagaaaattcaacgctatctgcaatcaacagcccagcccacttacttggca
gaacccaagctggatggcttggcggttgagttgatctatgaaaatggtttgctggtccaa
ggctccaccaggggaaacgggctggtcggtgaaaatattacggcccagctccagactgtt
caagtgatccctttgcggctgacagcaaaagaagggaatgagggaggatcaatcccggaa
aaattggtggtgcggggggaggtttttttgccccgtaaggcctttcttcagctcaatgaa
cagcggccagagcagggaaaggccctctttgccaacccgcgtaatgcggctgccggttcc
ctgcgtcaactggatcccaaggtgactgcctcaagatcgttgaacttttatgtctacggc
gtggctgatgttgaggcgacgccctgcgccgatctggaagaacttttttcctggctcgcc
cacctgggttttccggtcaatccgctgataaaattttgccccacccttgccgaggtagaa
aagcagtatcagcatctgcaaacgatccgtcacgagctggagtatgaaatcgacggcatg
gtaatcaaggtggctgattttgctctgcaacaacggctgggaaacacaacccgtgctccg
cgctgggccacagcttggaagtttcctgccacccaggcgacgactgtcatgaccggagtt
gatttccaagtaggccggaccggtgcgatcacgccggtggcgcttctggaaccggttgag
gtcgaaggggtcattgtacgccgagcaaccttgcataaccaggatgaaattgagcgcaaa
gggctgatgatcggcgacacggtccttatccagcgggccggagatgttattccggagatc
attaagcccattacagaacaacgcaccggcgaagaactgcctcttatcttcccgacccaa
tgcccgatctgcaccgcgccgctccagcgtcctgaaggtgaggcgatcacccgatgcgtc
agtctcctttgcccggcccagcagctgcaacggatgatttattttgtcggcaaggcaggg
cttgatattgacggctttgggcgcaaaaacgttgagcaactcatggaagtcgggctgatc
caggagattccagatatttttcgtctcccgaaagagcaactggctgtccttgacggctgg
ggtgaaaaatctgcggagaaattgctactggcaatcgccgaggcaacgcaccccacctta
tcccgcttcatcggtgccttgggaatccgatatgttggtgaaatgacctctgagttatta
acccgccatttcagcacccttgatgatctgctggtagcgaaaaaagatgatctgctggca
gtggagggcatcggtgagcaagcagcaatgagcctgattgagtattttgccaacagcgaa
aatcgggagatgattgagacgttgcttgatctcggcctgaccatagaaacagtgattcag
ggaaatagtgaaaacaacccgctggaaggggctatttttctctttaccggcaccctcact
cagatgtcgcgcaacgaggccaagcagctggtcaaggacttgggcggcagggtggtttct
gggctcagtaagaaggttactcatcttgtggctggggaaaaagctgggagcaagctcaag
aaagctgcggagatgggggttactgttgttgatgaggaggcgtttttggggattgttggt
aggatgtaa
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