Elizabethkingia miricola: VO54_01378
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Entry
VO54_01378 CDS
T03757
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
elb
Elizabethkingia miricola
Pathway
elb03030
DNA replication
elb03410
Base excision repair
elb03420
Nucleotide excision repair
elb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
elb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VO54_01378 (ligA)
03410 Base excision repair
VO54_01378 (ligA)
03420 Nucleotide excision repair
VO54_01378 (ligA)
03430 Mismatch repair
VO54_01378 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
elb03032
]
VO54_01378 (ligA)
03400 DNA repair and recombination proteins [BR:
elb03400
]
VO54_01378 (ligA)
Enzymes [BR:
elb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
VO54_01378 (ligA)
DNA replication proteins [BR:
elb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
VO54_01378 (ligA)
DNA repair and recombination proteins [BR:
elb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
VO54_01378 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VO54_01378 (ligA)
MMR (mismatch excision repair)
DNA ligase
VO54_01378 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VO54_01378 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
RNA_lig_T4_1
5_3_exonuc
HHH
BRCT_2
zf-ribbon_3
Dna2
zf-IS66
A2L_zn_ribbon
Motif
Other DBs
NCBI-ProteinID:
AJW62860
LinkDB
All DBs
Position
1485884..1487890
Genome browser
AA seq
668 aa
AA seq
DB search
MSENIQQKIEELREELHQHNYNYYILDEPSISDFEFDAKLKELQDLEAQYPEFNDPNSPT
LRVGGGVTKNFPTVQHQFRMYSLDNSYDFNDLEDWEKRIIKTIDEPVEFVAELKYDGASI
SILYENGKLSQAVTRGDGFQGDEITSNVRTISDVPLKLKGEFPERFYMRGEIYLTRKNFD
KLNALREEEGLDPFMNPRNTASGSLKMQDSGEVRKRGLSAVLYQYIAENFPAETHWDLLA
NAKQWGFRVSEDQAKLCRTLDDVKNFINYWDQERHNLPFEIDGIVIKVNSLKHQRELGYT
AKSPRWAMAYKFKAEKVETELLSVSYQVGRTGAITPVANLRPVLLAGTTVKRASLHNEDI
IKKLDLHENDFVYVEKGGEIIPKIVGVNTEKRTSESKEIEYIKHCPECGTELVKIEDQAI
HFCPNELHCPPQVVGRMIHYVSRKALNIENLGGETIEQLYREKLIENPADLYTLTKEQLL
PLERMAEKSAQNILDGVEKSKEIPFEKVLYGIGIKHVGETVAKKLVKNFPTIEELKNAAE
EELCQVEDIGAKIAVSITEFFANQENLLMIERLKNYGVQLEKGENTNDVISNVLDGKTFL
FTGKLSLFTREQAEEMVEKHGGKNISAVSKNLNYLIVGEKAGSKLKKAQDIGTITILDEQ
QFLDLVNS
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaaaatattcaacaaaagatagaagagctaagagaagaacttcaccaacataat
tacaattactatattctggatgaaccttctatctcggattttgaatttgatgcaaaacta
aaagaacttcaggatctggaagctcagtatccggaattcaatgatccaaactctcctact
ttacgagttggcggtggggttaccaaaaacttccctacggtacagcatcagttcagaatg
tactcattggataattcctatgacttcaatgatttggaggattgggaaaaacggataata
aagaccattgatgagcctgtagaatttgttgcagagctaaaatacgatggtgcttctatt
tccattctttatgaaaacggaaaattatcacaggcagtaacccgtggtgacggattccag
ggagatgaaattacaagtaatgtaagaactatttccgatgttccgttaaagttaaaaggt
gaattccctgaacgtttttatatgcgtggagaaatttatcttacccgaaaaaacttcgac
aaactcaatgcactgcgtgaggaagaggggcttgacccttttatgaacccacgaaataca
gccagcggaagccttaaaatgcaggattccggtgaggtaagaaaacgtggactttctgca
gtattatatcaatatatcgctgaaaatttccctgcagaaacacactgggatttattggca
aatgcaaagcaatggggcttccgggtttccgaagatcaggctaaattatgcaggaccttg
gatgatgtgaaaaatttcatcaattactgggatcaggaaagacataacctgccttttgaa
attgatggtattgtaataaaggtaaactccctaaaacatcagcgtgaacttggttatact
gccaaatcaccacgttgggctatggcctataagtttaaggcagagaaagtcgaaactgag
cttctgagcgtttcttatcaggttggaagaactggcgctattacccctgtagccaatctt
cgtccggttctattagccggaacaactgtaaaacgtgcatcactacataatgaggatatt
atcaaaaaattagatcttcatgaaaacgacttcgtttatgtagaaaaaggcggtgaaatc
attcctaaaattgtaggtgtcaatactgaaaaaagaacatctgaaagtaaagaaatagaa
tatataaagcactgtccggaatgtgggactgagcttgtaaaaatagaagatcaggcaata
catttttgtcctaacgaactgcattgcccgccacaggtagttggcagaatgatccactat
gtttcccgtaaagcgctgaatatagaaaatctgggtggtgaaactatcgaacagctttac
cgtgaaaagttaattgaaaatccggctgatctttatacactaaccaaggaacaattgctt
ccattagagcgtatggctgagaaatctgcacaaaacattctggatggtgtggaaaaatca
aaagaaataccttttgaaaaagtattgtacggaataggtatcaagcatgtgggggaaaca
gttgctaaaaagctggtgaaaaacttcccaacaatagaggaattaaaaaatgctgcagaa
gaagagctttgccaggtagaagatatcggtgcaaaaatagctgtaagtatcactgaattc
tttgcgaatcaggaaaaccttttgatgatagaacgtctgaaaaactatggtgtacaattg
gaaaaaggggaaaataccaatgacgtaatcagcaatgttctggacggaaaaacgtttctt
tttaccggaaaattgtctcttttcaccagggagcaggctgaagaaatggtagaaaaacat
ggtggtaaaaatatttctgctgtgtctaaaaacctaaactatctgattgttggagaaaag
gccggaagcaaactgaaaaaagctcaggatatcggaactattaccattctggatgaacag
caatttttggatcttgtcaatagctaa
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