Escherichia coli clone D i14: i14_4133
Help
Entry
i14_4133 CDS
T02003
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
elc
Escherichia coli clone D i14
Pathway
elc03030
DNA replication
elc03410
Base excision repair
elc03420
Nucleotide excision repair
elc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
elc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
i14_4133 (ligB)
03410 Base excision repair
i14_4133 (ligB)
03420 Nucleotide excision repair
i14_4133 (ligB)
03430 Mismatch repair
i14_4133 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
elc03032
]
i14_4133 (ligB)
03400 DNA repair and recombination proteins [BR:
elc03400
]
i14_4133 (ligB)
Enzymes [BR:
elc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
i14_4133 (ligB)
DNA replication proteins [BR:
elc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
i14_4133 (ligB)
DNA repair and recombination proteins [BR:
elc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
i14_4133 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
i14_4133 (ligB)
MMR (mismatch excision repair)
DNA ligase
i14_4133 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
i14_4133 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AER91578
LinkDB
All DBs
Position
complement(4121542..4123230)
Genome browser
AA seq
562 aa
AA seq
DB search
MMMKVWMAILISILCWQSSAWAVCPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVED
GVYDQLSARLTQWQRCFGNETRDVMMPPLNGAVMHPVAHTGVRKMADKNALSLWMRERSD
LWVQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANSTLQ
GEIFLKRKGHIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPHLMTDRLKD
LATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVVRAAKEPESRHWLPGQAE
WLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKIQRVNIGSVRRWQEWD
IAPGDQILVSLAGQGIPRIDDVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLV
WLGSKQVLGLDGIGEAGWRALHQTHRFEHIFSWLLLTPEQLQNTPGIAKSKSAQLWHQFN
LARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWK
ENAQIKKLGSWLSAQQITGFEP
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
gtgatgatgaaagtatggatggcgatattaataagtatcttgtgctggcaatcatcggcg
tgggcggtctgtccggcctggtcgccagccagagcacaggaagaaatttcccgcctgcaa
cagcaaataaaacagtgggacgatgactactggaaggaagggaaaagtgaggtggaagac
ggtgtttacgatcagttaagcgcccgtctcacgcagtggcaacgctgttttgggaacgag
actcgcgatgtgatgatgccgcctttaaacggtgcggttatgcatccggttgcccatacg
ggtgtacgcaaaatggcggataaaaacgcattaagtctgtggatgcgcgaacgtagcgat
ctttgggtgcagccaaaagttgatggcgttgcggtaaccctggtttatcgggacgggaaa
ctgaacaaagcaatcagtcgcggtaatggcctgaaaggcgaggactggacgcagaaagtt
cgcttaatttccgctgtgccgcaaaccgttagcgggcctttagccaacagcacgcttcag
ggggaaatatttctcaagcgtaaggggcatatccaacaacaaatggggggaataaatgcc
cgcgcaaaagttgctggcctgatgatgcgccaggggaatagcgatacgctaaactcactg
gctgtttttgtctgggcatggccggatggaccgcatttaatgaccgatcgtttaaaggat
ctggctaccgcaggttttactttaacgcagacgtatacccgcgcggttaaaaatgctgat
gaggttgcgcacgtacgcaatgagtggtggaaagcaaaattacccttcgtcaccgatggc
gtggttgtgcgagcggcgaaagaacccgaatcccgtcattggttaccgggccaggcggag
tggctggtggcctggaaatatcaacctgtagctcaggttgccgaagtgaaggcgattcaa
tttgcggtgggtaagagcggtaaaatatcggtggtggcgtcactcgcacctgtcatgctg
gatgataaaaaaatccagcgggtgaatattggttccgtcaggcgctggcaggaatgggat
attgcgcctggtgatcagatcctcgtcagccttgccggtcaggggattcctcgcattgat
gatgtggtctggcgcggagcagaacgtacaaaaccgacaccaccagaaaaccgctttaac
tcgttgacctgctactttgcttctgatgtttgtcaggaacagttcatttcacgcttagtc
tggctggggtcaaaacaggttctggggcttgatggcattggtgaggccggctggcgcgcc
ctgcatcagactcatcgctttgagcatatcttttcctggcttttattaacgccagagcaa
ttacagaacacgccggggatcgcgaaaagtaaaagtgcgcagttatggcatcagtttaat
ctggctcgtcagcagccttttactcgctgggtgatggcaatgggaataccgctaacccgg
gcggcgcttaatgccagtgatgaacggtcctggtcgcaacttttatttagcacggaacag
ttctggcagcagctgccggggactggatcggggcgcgccagacaggttattgaatggaag
gaaaatgcgcaaatcaagaagctgggcagttggctgtctgcccagcagatcacaggtttt
gaaccttag
DBGET
integrated database retrieval system
