Escherichia coli LF82: LF82_1197
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Entry
LF82_1197 CDS
T00854
Symbol
ligB
Name
(GenBank) Uncharacterized DNA ligase-like protein yicF
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
elf
Escherichia coli LF82
Pathway
elf03030
DNA replication
elf03410
Base excision repair
elf03420
Nucleotide excision repair
elf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
elf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LF82_1197 (ligB)
03410 Base excision repair
LF82_1197 (ligB)
03420 Nucleotide excision repair
LF82_1197 (ligB)
03430 Mismatch repair
LF82_1197 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
elf03032
]
LF82_1197 (ligB)
03400 DNA repair and recombination proteins [BR:
elf03400
]
LF82_1197 (ligB)
Enzymes [BR:
elf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LF82_1197 (ligB)
DNA replication proteins [BR:
elf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LF82_1197 (ligB)
DNA repair and recombination proteins [BR:
elf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LF82_1197 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LF82_1197 (ligB)
MMR (mismatch excision repair)
DNA ligase
LF82_1197 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LF82_1197 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
CAP78100
LinkDB
All DBs
Position
complement(3861795..3863312)
Genome browser
AA seq
505 aa
AA seq
DB search
MEDGVYDQLSARLTQWQRCFGNETRDVMMPPLNGAVMHPVAHTGVRKMADKNALSLWMRE
RSDLWVQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANS
TLQGEIFLQRKGHIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPHLMTDR
LKDLATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVVRAAKEPESRHWLPG
QAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKIQRVNIGSVRRWQ
EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFIS
RLVWLGSKQVLGLDGIGEAGWRALHQTHRFEHIFSWLLLTPEQLQNTPGIAKSKSAQLWH
QFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVI
EWKENAQIKKLGSWLAAQQITGFEP
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
gtggaagacggtgtttacgatcagttaagcgcccgtctcacgcagtggcaacgctgtttt
gggaacgagactcgcgatgtgatgatgccgcctttaaacggtgcggttatgcatccggtt
gcccatacgggtgtacgcaaaatggcggataaaaacgcattaagtctgtggatgcgcgaa
cgtagcgatctttgggtgcagccaaaagttgatggcgttgcggtaaccctggtttatcgg
gacgggaaactgaacaaagcaatcagtcgcggtaatggcctgaaaggcgaggactggacg
cagaaagttcgcttaatttccgctgtgccgcaaaccgttagcgggcctttagccaacagc
acgcttcagggggaaatatttctccagcgtaaggggcatatccaacaacaaatgggggga
ataaatgcccgcgcaaaagttgctggcctgatgatgcgccaggggaatagcgatacgcta
aactcactggctgtttttgtctgggcatggccggatggaccgcatttaatgaccgatcgt
ttaaaggatctggctaccgcaggttttactttaacgcagacgtatacccgcgcggttaaa
aatgctgatgaggttgcgcacgtacgcaatgagtggtggaaagcaaaattacccttcgtc
accgatggcgtggttgtgcgagcggcgaaagaacccgaatcccgtcattggttaccgggc
caggcggagtggctggtggcctggaaatatcaacctgtagctcaggttgccgaagtgaag
gcgattcaatttgcggtgggtaagagcggtaaaatatcggtggtggcgtcactcgcacct
gtcatgctggatgataaaaaaatccagcgggtgaatattggttccgtcaggcgctggcag
gaatgggatattgcgcctggtgatcagatcctcgtcagccttgccggtcaggggattcct
cgcattgatgatgtggtctggcgcggagcagaacgtacaaaaccgacaccaccagaaaac
cgctttaactcgttgacctgctactttgcttctgatgtttgtcaggaacagttcatttca
cgcttagtctggctggggtcaaaacaggttctggggcttgatggcattggtgaggccggc
tggcgcgccctgcatcagactcatcgctttgagcatatcttttcctggcttttattaacg
ccagagcaattacagaacacgccggggatcgcgaaaagtaaaagtgcgcagttatggcat
cagtttaatctggctcgtcagcagccttttactcgctgggtgatggcaatgggaataccg
ctaacccgggcggcgcttaatgccagtgatgaacggtcctggtcgcaacttttatttagc
acggaacagttctggcagcagctgccggggactggatcggggcgcgccagacaggttatt
gaatggaaggaaaatgcgcaaatcaagaagctgggcagttggctggctgcccagcagatc
acaggttttgaaccttag
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