Eubacterium limosum: B2M23_12415
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Entry
B2M23_12415 CDS
T06653
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
elim
Eubacterium limosum
Pathway
elim03030
DNA replication
elim03410
Base excision repair
elim03420
Nucleotide excision repair
elim03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
elim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
B2M23_12415 (ligA)
03410 Base excision repair
B2M23_12415 (ligA)
03420 Nucleotide excision repair
B2M23_12415 (ligA)
03430 Mismatch repair
B2M23_12415 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
elim03032
]
B2M23_12415 (ligA)
03400 DNA repair and recombination proteins [BR:
elim03400
]
B2M23_12415 (ligA)
Enzymes [BR:
elim01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
B2M23_12415 (ligA)
DNA replication proteins [BR:
elim03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
B2M23_12415 (ligA)
DNA repair and recombination proteins [BR:
elim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
B2M23_12415 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
B2M23_12415 (ligA)
MMR (mismatch excision repair)
DNA ligase
B2M23_12415 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
B2M23_12415 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
RNA_pol_A_CTD
BRCT_2
HHH
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
ARD66305
UniProt:
A0AAC9QV33
LinkDB
All DBs
Position
2642864..2644864
Genome browser
AA seq
666 aa
AA seq
DB search
MNEELKQAEAKISQLKKQIEENNVRYYDKDAPVIPDYAYDRMMQELISLETAYPQFLTSD
SPSQRVGGAPSEAFEKVHYTTPKLSLSNAFNAGDLRDFDTRIRKVCPDVAYCVEHKFDGL
TVVLDYENGLLVRGSTRGDGVTGENVTQNLKTVKTIPLRLTEPMTLEVRGEVLIYKEDFE
ELNAAREEQGEPLFANPRNAAAGSIRQLDPKLAAERPLDIFVFNLEYCENRSFETHKESF
DFLTHCGFKTSEVKLYKDMEDIITYIEEMEHGGREALPYEIDGMVIKVNNLAERERLGDT
SKSPRWAIAYKFSPEQTVTTVRDITVQVGRTGALTPVAELEPVLLAGSVISRATLHNEDY
IIDKDIRIGDRVVIQKAGDVIPEVDHSIPEDRTGAEVVFTMPAHCPVCGSKTYRVPGEAV
TKCLNMDCPAQVFRKIVHFASRDAMNIDGMGPAVVRQLLDSELIHTIVDIYHVSDRREDL
IGLEKMGEKSVDNLINAIEDSKSRPLSKVVFALGIPLVGANGAKILASHFGSMDALMEAS
EEELTEIYDIGGKMAVEIVDFFKTDANRRIVDGLREAGVNMTENAARATAELAGKTFVLT
GTLPTMGRREAKEILESHGAKVSGSVSKKTDYVLAGENPGSKAEKAVSLDVPVIDEETFK
KMVGLE
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaagaactaaaacaggctgaggccaaaatcagccagcttaaaaaacaaattgaa
gagaacaatgtccggtattacgataaggacgcgcctgtcataccagactatgcgtatgac
cgcatgatgcaggagctcatcagtctggagacagcctatccacagttcctgacttctgac
tcacccagccagcgtgtgggcggcgcgccgtcagaggcctttgagaaggttcactacacc
acgcccaagctcagcctcagcaacgcctttaacgccggggatctgagggattttgatacc
cgtatccgcaaggtctgccccgatgtggcgtactgtgtcgagcataaattcgatggcctg
accgtcgtgttagactacgaaaatggactgctggtccgcggctctacccgcggcgacggt
gtgaccggcgaaaatgtcacccagaatctgaaaacggtcaagaccattcctctgcgtctc
acagaacccatgaccctggaggtccgtggggaggtgctgatctataaggaggactttgag
gagctgaacgctgcgcgggaggaacagggtgagcccctgttcgccaatcccagaaacgcc
gccgcaggctctatccgtcagcttgaccctaaactggcggccgaaaggcctctggacatc
tttgtatttaacctggaatactgcgagaatcggtccttcgagacccataaggaaagcttt
gatttcctcacacactgcggttttaaaaccagtgaggtgaagctttacaaggatatggag
gacatcatcacctacattgaggagatggaacatggcggaagagaggccctgccctatgag
attgacggcatggtcatcaaggtcaataatctggcggagcgggagcggctgggggacacc
tctaagtcgccgcgttgggccattgcctacaagttctcgcctgagcagacagtgaccact
gtgcgggatattaccgtgcaggtgggccgtaccggcgccctgacgcctgtggcagagctt
gagcctgtgctgctggccggctccgttatttcccgggcgaccctccataacgaggactac
atcatcgacaaggatatccggatcggcgacagggttgtcatccagaaggccggggatgtt
atccctgaggtggaccactccatcccagaggaccgcactggcgcagaggttgttttcacc
atgcctgcccattgcccggtctgcggctccaaaacctaccgggtgcccggcgaggctgtg
accaagtgtctgaacatggactgtccggcccaggtgttccgcaagattgtgcactttgcc
tccagagacgccatgaacatcgacggtatgggtcctgcggtggtgagacagctgctggat
agcgaattgatccacaccattgtggatatctaccatgtttcggaccgtcgtgaggacctg
atcggtctggaaaaaatgggtgaaaaatctgtggataacctcataaatgccatagaggac
tccaagagcaggcccctctccaaggtggtttttgccctgggaattccgctggtaggagct
aatggggctaaaatactggcctcccacttcggcagcatggacgcccttatggaagcctcc
gaggaggagctgacagagatttatgacattggcggcaaaatggctgtggaaattgtggac
tttttcaagaccgacgccaaccgccgcattgtggacggtctgcgcgaggctggtgtcaat
atgacggaaaatgccgccagggccacagcagagcttgcgggtaagacctttgtcctgacc
ggcacactgcccaccatgggacgccgtgaggccaaggagatcctggagagccacggcgcc
aaggtgtccggctcagtcagtaaaaaaaccgattatgtgctggccggtgagaaccccggc
tcaaaggctgagaaagccgtgagcctggacgtgccagtcattgacgaggaaacctttaaa
aaaatggtcggcttggaataa
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