Elioraea tepida: KO353_04955
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Entry
KO353_04955 CDS
T07340
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
elio
Elioraea tepida
Pathway
elio03030
DNA replication
elio03410
Base excision repair
elio03420
Nucleotide excision repair
elio03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
elio00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KO353_04955 (ligA)
03410 Base excision repair
KO353_04955 (ligA)
03420 Nucleotide excision repair
KO353_04955 (ligA)
03430 Mismatch repair
KO353_04955 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
elio03032
]
KO353_04955 (ligA)
03400 DNA repair and recombination proteins [BR:
elio03400
]
KO353_04955 (ligA)
Enzymes [BR:
elio01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KO353_04955 (ligA)
DNA replication proteins [BR:
elio03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KO353_04955 (ligA)
DNA repair and recombination proteins [BR:
elio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KO353_04955 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KO353_04955 (ligA)
MMR (mismatch excision repair)
DNA ligase
KO353_04955 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KO353_04955 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
GT4-conflict
Nlig-Ia
Bep_C_terminal
DZR_2
Motif
Other DBs
NCBI-ProteinID:
QXM25564
UniProt:
A0A975U4U4
LinkDB
All DBs
Position
1026535..1028619
Genome browser
AA seq
694 aa
AA seq
DB search
MTGGLRARPPEALTETEAAEELAALAAEIARHDRLYFQRDRPEISDAEYDALKRRNDAIE
ARFPHLVRPDSPSRRVGAAPVRGFAKARHRQPMLSLDNAFDREDFAAFVSRIRNFLGLDP
GIRLAFVAEPKIDGASINLTYERGVFVRGATRGDGTEGEDVTANLLTVADLPRRLSGDAP
ALIEIRGEVYMEKAEFLALNARLESEGEEPFMNPRNAAAGSLRQKDPSVTATRPLRLFAY
AMGEASERVADTHHGFLERLRLWGMPVNPLSALLEDWQEAEAFQERIGAQRSALPYDIDG
VVYKLDRLDWQERLGVVGRAPRWAIAWKFPAERATTVLRDIEIQVGRTGALTPRAVMDPV
TVGGVVVRHATLHNEDEIARKDIRIGDTVIVQRAGDVIPQVVGVVLEKRPAGAAPYVFPD
RCPACGSHAVRAEGEAVRRCTGGLICPAQVVERLRHFASRGAVDIEGLGEENIILFHDAG
LIREPADIYRLHRHREVILSWKGWKERKLDNLLRAIEARRRIPLERLIFALGIRRVGEAT
ARLLARHYGSFRAWREAMLAARVAGSEARQELGTIVGIGPAIAEELVEFFAEPRNLKALD
ALMAEVTAEDATVPEAAASPLAGKTVVFTGTLETMTRQEAKARAEALGAKVTDSVSKKTD
LVVVGADAGSKAEKAAALGVRTLTEAEWRALIGL
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgacaggggggttgcgcgcgcgcccgccggaggcgctgaccgagacggaagcggcggag
gagcttgccgcgctcgccgccgagatcgcccggcacgataggctctacttccagcgcgac
cggcccgagatctcggatgccgaatatgacgcgctgaagcgacggaacgacgcgatcgag
gcgcggtttccccatctcgtccggcccgacagcccctcgcgccgggtcggcgccgccccg
gtgcgcggcttcgccaaggcgcggcatcgccagccgatgctctcgctcgacaacgccttc
gatcgggaggatttcgccgctttcgtttcgcgcatccgcaatttcctcggcctcgacccg
ggcatccgcctcgccttcgtcgccgagccgaagattgacggcgcctcgatcaacctgacc
tacgagcggggcgtgttcgtccgcggcgccacgcgcggcgacggcacggaaggcgaggac
gtgaccgccaacctgctcaccgtcgctgacctgccgcgccggctctcgggcgacgccccg
gcgctgatcgagattcgcggcgaggtctacatggagaaggccgagttcctcgcgctcaac
gcgcggctcgagagcgagggcgaggagccgttcatgaacccgcgcaacgccgctgccgga
tcgttgcgccagaaggacccgtccgtcaccgcaacgcggccgctgcgcctgttcgcctat
gcgatgggcgaggcctcggagcgcgtcgccgacacccaccacggcttcctcgagcgcctg
cgcctctggggcatgccggtgaacccgctctccgccctgctcgaggactggcaggaggcg
gaagcgttccaggaacgaatcggcgcccagcgctccgccctgccctacgacatcgacggt
gtggtctacaagctcgatcggcttgattggcaggagcggctcggcgtcgtcggccgcgcg
ccgcgctgggcgatcgcgtggaagttcccggccgagcgggcaacgaccgtgctgcgcgac
atcgagatccaggtcggccgcaccggggcgctgacgccgcgcgcggtgatggacccggtc
accgtcggcggcgtcgtcgtccgccacgccacgctgcacaacgaggacgagatcgcgcgc
aaggacatccgaatcggcgatacggtgatcgtccagcgcgccggagacgtgatcccgcag
gtggtcggcgtggtgctggagaagcggccggccggcgcggctccttacgtgttccccgac
cgctgcccggcctgcggcagccacgcggttcgcgccgagggagaggcggtgcgtcgttgc
accggcgggctgatctgccccgcccaggtggtggagcggctgcgccatttcgcctcgcgc
ggcgcggtcgacatcgaaggcctcggcgaggagaacatcatcctgttccacgacgcgggc
ctgatccgcgaaccggccgacatctaccgcctccatcgccaccgcgaggtgatcctctcc
tggaaaggctggaaggagcgcaagctcgacaacctcctcagggcgatcgaggcgcggcgg
cgcatcccgctcgagcggctgatcttcgccttggggatacgccgcgtcggcgaggcaacg
gcgcggctgcttgcccgccactacggaagcttccgcgcctggcgcgaggcgatgctcgcg
gcgcgtgtcgccggctccgaagcccgccaggagctcggcaccattgtcggcatcggcccc
gcgatcgccgaggagctcgtcgagttcttcgccgaaccgcgcaacctcaaggcgctcgat
gcgctgatggcggaggtgacggccgaggacgcgaccgtgccggaggcggcagcgagcccg
ctcgccggcaagacagtggtgttcaccggaacgctcgagacgatgacgcgccaagaggcg
aaggcgcgcgccgaggcgctcggcgcgaaggtgaccgacagcgtctcgaaaaagaccgat
ctcgttgtggtcggcgcggacgccggctcgaaggcggagaaggcggcggcgctcggggtg
cgcaccctcaccgaggcggagtggcgggcgctcattgggctttga
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