Eubacterium callanderi: ELI_0944
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Entry
ELI_0944 CDS
T01336
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
elm
Eubacterium callanderi
Pathway
elm03030
DNA replication
elm03410
Base excision repair
elm03420
Nucleotide excision repair
elm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
elm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ELI_0944
03410 Base excision repair
ELI_0944
03420 Nucleotide excision repair
ELI_0944
03430 Mismatch repair
ELI_0944
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
elm03032
]
ELI_0944
03400 DNA repair and recombination proteins [BR:
elm03400
]
ELI_0944
Enzymes [BR:
elm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ELI_0944
DNA replication proteins [BR:
elm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ELI_0944
DNA repair and recombination proteins [BR:
elm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ELI_0944
NER (nucleotide excision repair)
GGR (global genome repair) factors
ELI_0944
MMR (mismatch excision repair)
DNA ligase
ELI_0944
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ELI_0944
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
ADO35952
UniProt:
A0A853JR37
E3GJP4
LinkDB
All DBs
Position
914662..916662
Genome browser
AA seq
666 aa
AA seq
DB search
MNEELKQAEAKISQLKKQIEENNVRYYDKDAPVIPDYAYDRMMQELISLETAYPQFLTSD
SPSQRVGGAPSEAFEKVHYTTPKLSLSNAFNAGDLRDFDTRIRKVCPDVAYCVEHKFDGL
TVVLDYENGLLVRGSTRGDGVTGENVTQNLKTVKTIPLRLTEPMTLEVRGEVLIYKEDFE
ELNAAREEQGEPLFANPRNAAAGSIRQLDPKLAAERPLDIFVFNLEYCENRSFETHKESF
DFLTHCGFKTSEVKLYKDMEDIITYIEEMEHGGREALPYEIDGMVIKVNNLAERERLGDT
SKSPRWAIAYKFSPEQTVTTVRDITVQVGRTGALTPVAELEPVLLAGSVISRATLHNEDY
IIDKDIRIGDRVVIQKAGDVIPEVDHSIPEDRTGAEVVFTMPAHCPVCGSETYRVPGEAV
TKCLNMDCPAQVFRKIVHFASRDAMNIDGMGPAVVRQLLDNELIHTIVDIYHVSDRREDL
TGLEKMGEKSVDNLINAIEDSKSRPLSKVVFALGIPLVGANGAKILASHFGSMDALMEAS
EEELTEIYDIGGKMAVEIVDFFKTDANRRIVDGLREAGVNMTENTARATAELAGKTFVLT
GTLPTMGRREAKEILESHGAKVSGSVSKKTDYVLAGENPGSKAEKAMSLDVPVIDEETFK
KMVGLE
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaagaactaaaacaggctgaggccaaaatcagccagcttaaaaaacaaattgaa
gagaacaatgtccggtattacgataaggacgcgcctgtcataccagactatgcgtatgac
cgcatgatgcaggagctcatcagtctggagacagcctatccacagttcctgacttctgac
tcacccagccagcgtgtgggcggcgcgccgtcagaggcctttgagaaggttcactacacc
acgcccaagctcagcctcagcaacgcctttaacgccggggacctgagggattttgatacc
cgtatccgcaaggtctgccccgatgtggcgtactgtgtcgagcataaattcgatggcctg
accgtcgtgttagactacgaaaatggactgctggtccgcggctctacccgcggcgacggt
gtgaccggcgaaaatgtcacccagaatctgaaaacggtcaagaccattcctctgcgtctc
acagaacccatgaccctggaggtccgtggggaggtgctgatctataaggaggactttgag
gagctgaacgctgcgcgggaggaacagggtgagcccctgttcgccaatccaagaaacgcc
gccgcaggctctatccgtcagcttgaccctaaactggcggccgaaaggcctctggacatc
tttgtatttaacctggaatactgcgagaaccggtccttcgagacccataaggaaagcttt
gatttcctcacacactgcggttttaaaaccagtgaggtgaagctttacaaggatatggag
gacatcatcacctacattgaggagatggaacatggcggaagagaggccctgccctatgag
attgacggcatggtcatcaaggtcaataacctggcggagcgggagcggctgggggacacc
tctaagtcgccgcgttgggccattgcctacaagttctcgcctgagcagacagtgaccact
gtgcgggatattaccgtgcaggtgggccgtaccggcgccctgacgcctgtggcagagctt
gagcctgtgctgctggccggctccgttatttcccgggcgaccctccataacgaggactac
atcatcgacaaggatatccggatcggcgacagggttgtcatccagaaggccggggatgtt
atccctgaggtggaccactccatcccagaggaccgcactggcgcagaggttgttttcacc
atgcctgcccattgcccggtctgcggctccgaaacctaccgggtgcccggcgaggctgtg
accaagtgtctgaatatggactgtccggcccaggtattccgcaagattgtgcactttgcc
tccagagatgccatgaacatcgacggcatgggccccgcggtggtgcgacagctgctggat
aacgaattgatccacaccattgtggatatctaccatgtttcggaccgtcgtgaggatctg
accggacttgaaaaaatgggtgaaaaatctgtggataacctcataaacgccatagaggac
tctaagagcaggcccctctccaaagtggtttttgcccttggaattccgctggtaggagct
aatggggctaaaatactggcctcccacttcggcagcatggacgcccttatggaagcctcc
gaggaggagctgacagagatttatgacatcggcggcaaaatggctgtggaaattgtggac
tttttcaagaccgacgccaaccgccgcattgtggacggcctgcgcgaggctggtgtcaac
atgacggaaaataccgccagggcaacagcagagctcgcgggtaagacctttgtcctgacc
ggcacactgcccaccatgggccgccgtgaggccaaggagatcctggagagccacggcgcc
aaggtgtccggctcagtcagtaaaaaaaccgattatgtgctggccggcgagaaccccggc
tcaaaggctgagaaagccatgagcctggacgtgccggtcattgacgaggaaacctttaaa
aaaatggtcggcttggaataa
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