Esox lucius (northern pike): 105013311
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Entry
105013311 CDS
T04894
Symbol
eftud2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
els
Esox lucius (northern pike)
Pathway
els03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
els00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105013311 (eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
els03041
]
105013311 (eftud2)
Spliceosome [BR:
els03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
105013311 (eftud2)
Complex C
U5 SnRNP specific factors
105013311 (eftud2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
105013311
NCBI-ProteinID:
XP_012991554
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All DBs
Position
LG11:13822363..13835136
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AA seq
970 aa
AA seq
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METDLYDEFGNYIGPELDSDEDDDLEADDRDVDEADEDDEDEPADADEEVPGMEVVLHED
KKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVRNKQFTLMEQELPSTVYEMEFLADL
MDSPELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDMDLRYTDILFTEQERGVGIK
STPVTMVLPDSRGKSFLFNIMDTPGHVNFSDEVTSGIRLSDGIVLFIDAAEGVMLNTERL
IKHAVQERLAITICINKVDRLIVELKLPPTDAYYKLRHIVDEVNAMLSTYSTDETVVVSP
LLGNVCFASSQYCVCFTLGSFAKIYSDTYGDINYTEFAKRLWGDIYFNPKTRKFTKKAPT
SNSQRSFVEFVLEPLYKILSQVVGDCDTSLPRVLDELGIHLVKEELKLNIRPLLRLVCKR
FFGEFTGFVDMCVQHIPSPQGGAKVKMEHSYTGGLDSDLGEAMAECDPDGPLMCHTTKMY
STEDGVQFHAFGRVLSGTIQAGQPVKVLGENYTLEDEEDSQVCTVGRLWINVARYQIEVN
RVPAGNWVLIEGCDQPIVKTATITEPRGNEEAQIFRPLKFNTVSVIKIAVEPVNPSELPK
MLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVTF
CETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKY
DWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDE
PIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADC
VSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFH
HWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLELA
KQDVVLNYPM
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atggagacggatctttatgacgagtttggaaactacattggcccggaactagattctgat
gaggatgatgacctggaggcagatgacagagatgttgatgaggctgatgaggatgacgag
gatgagcctgctgacgctgatgaagaggtcccagggatggaggtggttctgcatgaggat
aagaagtactatccaacagcagaagaagtgtatgggccggaggtggagactatagtccag
gaagaggacacacagcccctcacagagcccattatcaagcctgtaagaaacaagcagttc
accctgatggaacaggagctcccatccaccgtctatgaaatggagttcctggctgacctg
atggacagtcccgagctcatccgtaacgtcaccctgtgtggtcacctgcatcacggcaag
acatgttttgtggactgcctgattgaacagacgcacccagagatcaggaagagggatgac
atggatctgcgctacacagacatcctcttcacagagcaagagaggggggtcggcatcaag
agcacccctgtcacaatggttcttcctgattccagaggcaaatcctttctcttcaacatc
atggacacaccaggacatgtcaatttttcggatgaggtgacatccggcattagactctcc
gacggcatcgtgcttttcatcgacgctgctgaaggagtgatgttgaacacagagcgtctg
atcaagcatgctgtccaggagcgcctggccatcaccatctgtatcaacaaggtggaccgc
ctcatcgtggagctcaagctgcctcccacagacgcctactacaagctacgtcacatagtg
gatgaggtcaacgccatgctcagcacctactctacagatgaaaccgtggtggtgtctcct
ctgctggggaacgtgtgtttcgccagctcccagtactgtgtctgcttcactctgggctcc
tttgcgaagatctactccgacacctacggtgacatcaactacacagagtttgccaagagg
ctgtggggtgacatttacttcaaccccaaaacgcgcaagttcacaaaaaaagcccccacc
agtaactcccagcggagctttgtggagtttgttctggagcctctttacaagatcctgtcc
caggtggtgggcgactgcgacacgtctctccctcgggtgctggacgagcttgggatccac
cttgtcaaagaggagctgaagctcaacatcaggcccctgctcaggctggtttgcaaacgc
ttcttcggagagttcaccggctttgtagacatgtgtgtgcagcacattccttcgcctcaa
gggggcgccaaagtcaagatggagcacagctacactggaggactggactctgacctgggg
gaggccatggcagaatgtgacccggacgggcctctcatgtgccacaccaccaagatgtac
agcacggaggacggggtccagttccacgcgtttggcagggtgctgagtgggaccattcag
gccggccagcccgtcaaggtgctgggggagaactacaccctggaggacgaggaggactcc
caggtctgcaccgtgggacgtctctggatcaacgtggccaggtaccagattgaggtgaac
cgggtccctgctggtaactgggttctcatcgagggttgcgaccagcccatcgtcaagacg
gccaccatcactgagcccagagggaatgaagaggcccagatcttcaggccgctaaagttc
aacactgtgtcggtcatcaagatcgccgtggagcctgtcaacccctcagagcttcccaag
atgttggacgggctgcggaaggtcaacaagagctacccgtcactgaccaccaaggtggag
gagtcaggggaacacgtcatcctgggcacgggggaactctacctggactgcgtcatgcac
gacctgcgcaagatgtactctgagatcgacattaaggtggctgaccccgtggtgaccttc
tgcgagaccgtagtggagacgtcgtcgctcaagtgttttgccgaaacgcccaacaagaag
aataagatcaccatgattgctgagcctctggagaagggcctggctgaggacatagagaac
gaggtggtgcagatcacatggaacaggaagaaactgggagagtttttccagacgaagtac
gactgggatctgctggctgccaggtctatctgggcctttgggccggacaccactggacct
aacatcctggtagatgacaccctgccttcagaggtggacaaggctctgctgggctccgtg
aaggacagcatcgtccagggcttccagtggggcactagagagggacctctctgcgatgaa
cccattagaaacgtgaagtttaagatcctggatgcggtcattgcccaggagcctctacac
cgaggtggaggacaggtcatcccgacagccaggagggtggtgtactccgccttcctcatg
gccacccctcggttgatggagccatattactttgtggaggtccaggccccggctgactgt
gtctcggcggtgtacaccgtgctggcccggcggaggggtcatgtgacccaggacgccccc
atccccgggtcgccgctctacaccattaaggccttcatccccgccatcgactcgtttggc
ttcgagacagacctgaggacgcacacccaggggcaggccttctccctgtccgtcttccac
cactggcagatcgtgcctggtgaccccctggacaagagcatcgtgattaggccgctggag
ccccagcctgctccccatctggcccgagagttcatgatcaagacccgccggcgcaagggc
ctgagtgaggacgtcagcatcagcaagttcttcgacgaccccatgttgttggagctggcc
aagcaggacgtggtcctgaactaccccatgtga
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