Esox lucius (northern pike): 105025313
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Entry
105025313 CDS
T04894
Symbol
traf6
Name
(RefSeq) TNF receptor-associated factor 6 isoform X1
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
els
Esox lucius (northern pike)
Pathway
els04010
MAPK signaling pathway
els04120
Ubiquitin mediated proteolysis
els04140
Autophagy - animal
els04144
Endocytosis
els04620
Toll-like receptor signaling pathway
els04621
NOD-like receptor signaling pathway
els04622
RIG-I-like receptor signaling pathway
els05132
Salmonella infection
els05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
els00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
105025313 (traf6)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
105025313 (traf6)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
105025313 (traf6)
04140 Autophagy - animal
105025313 (traf6)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
105025313 (traf6)
04621 NOD-like receptor signaling pathway
105025313 (traf6)
04622 RIG-I-like receptor signaling pathway
105025313 (traf6)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
105025313 (traf6)
09171 Infectious disease: bacterial
05132 Salmonella infection
105025313 (traf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
els04131
]
105025313 (traf6)
04121 Ubiquitin system [BR:
els04121
]
105025313 (traf6)
Enzymes [BR:
els01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105025313 (traf6)
Membrane trafficking [BR:
els04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
105025313 (traf6)
Ubiquitin system [BR:
els04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
105025313 (traf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-RING_UBOX
zf-C3HC4_3
zf-C3HC4_4
U-box
zf-RING_5
DM
TRAF3_RING
Phage_GP20
CENP-F_leu_zip
Sina_ZnF
Motif
Other DBs
NCBI-GeneID:
105025313
NCBI-ProteinID:
XP_010894217
LinkDB
All DBs
Position
LG02:complement(6338116..6345078)
Genome browser
AA seq
559 aa
AA seq
DB search
MACFESEKSSLEDDSCFGGLGASPLSNCALAMLEKESGDSVLSPTESSVGLGASTGLPVG
APPQGYDVEFDPPLESKYECPICLMALRAAVQTPCGHRFCRCCIEKSIRDTGQRCPVDNE
VLREDQLFPDNFAKREILSLTVRCPNVGCTDKMELRRLDSHVTKCEFTSVACPLCQDAVW
KSRLEEHKSQHCLRRPASCKDCAETFVFENTKLHESLCPFASVVCQYCSMELIRDQLEPH
YDTECPKAPIACTFSAFGCREMSQMQRTDLAQHMQEFTQMHMRYLAEYLRSHSLTGCARP
PPQPSLEDRGGVAEPGACRGASGTSAPCQCCGQLQTMRETTQQLEGRLVLQDHQLRELTI
QVGQVAELRRKVCSLEESLKELEAKQCQGVYVWPLEGFSGYLRNQAAGQTVVVHSPGFYT
GRPGYKLCLRLHLQTPSAQRCSNYISLFVHTMQGEFDGQLSWPFQGTIRLAVLDPSPEGQ
HHVEVMETKPDLQAFQRPTIQRNPKGFGYVTFMHLNQLQQRGFVRDDTLLVRCEVIPRFE
GTLRREGVAMQPRGPEGSL
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atggcttgcttcgagagcgagaagagcagcctggaggatgactcgtgttttggtgggttg
ggcgcgtctccattgtctaactgtgcgttggctatgctggagaaagagagcggcgattct
gtgttgagtcccacggaaagctcagtgggcctcggggcctccaccggcctgccggttggt
gccccgccacagggctatgatgtggagttcgaccctccactggagagcaagtacgagtgc
ccaatctgcctcatggccctcagggcagccgttcagacgccctgcggccaccgattctgc
cgctgctgcatcgagaagtccatccgcgatacagggcagaggtgtccggtggataacgaa
gtacttcgggaagatcagctgttcccggataactttgccaagcgggagatcctctcctta
acggtccgctgccccaacgtaggctgcacggataaaatggagcttcgccgcttggacagc
catgtaacgaagtgtgagtttaccagcgtggcatgcccgctgtgccaggacgcggtgtgg
aaaagccgcctggaggagcacaaaagccagcactgtctgcgtcgacctgcctcgtgtaaa
gactgtgcagagacatttgtttttgagaacaccaagcttcatgagtcgctgtgtcctttt
gccagcgtggtgtgtcaatactgcagtatggagctcatcagagaccagttggaacctcac
tatgacactgagtgtccgaaagctccaattgcctgtaccttcagcgcctttgggtgtcgg
gagatgagccagatgcagcgcaccgacctggcacagcacatgcaggagttcacacagatg
cacatgcgctacttggccgagtacctgcggagccacagcctcaccggctgcgcccggcca
cctccgcagccttctctcgaggacagggggggcgtggcagagcccggggcatgccgagga
gccagcggcacgagcgccccctgtcagtgctgtgggcagctgcaaaccatgagggagacc
acccagcagctcgaggggcgactcgtccttcaggaccaccagctacgcgagttgaccatc
caggtgggacaggtggcggagctgcgtcgcaaggtctgctccctggaggagagcctgaag
gagctggaggccaagcagtgccagggggtgtacgtgtggcccctggagggcttctccggc
tacctccgcaaccaggcggccggacagacggtggtggtgcacagcccgggcttctacacc
ggacggccgggctacaagctgtgcctccgcctgcacctccagacgccctcggcccagcgc
tgctccaactacatctccctattcgtgcacaccatgcagggcgagtttgacgggcagctc
tcgtggccgttccagggcaccatccggctggcggtgcttgacccgagccccgagggccag
caccacgtggaggtgatggagaccaagcctgacctgcaggccttccaaaggcccaccatc
cagaggaaccccaagggcttcggctacgtcaccttcatgcacctgaaccagctgcagcag
cggggcttcgtgcgcgacgacacgctgctggtgcgatgcgaggtgatcccgcgcttcgaa
ggcaccctgaggcgggagggggtggccatgcagcccagagggccggagggctcgctctga
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integrated database retrieval system
