Esox lucius (northern pike): 105030602
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Entry
105030602 CDS
T04894
Symbol
brca1
Name
(RefSeq) breast cancer type 1 susceptibility protein isoform X1
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
els
Esox lucius (northern pike)
Pathway
els03440
Homologous recombination
els03460
Fanconi anemia pathway
els04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
els00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
105030602 (brca1)
09124 Replication and repair
03440 Homologous recombination
105030602 (brca1)
03460 Fanconi anemia pathway
105030602 (brca1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
els01009
]
105030602 (brca1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
els04121
]
105030602 (brca1)
03036 Chromosome and associated proteins [BR:
els03036
]
105030602 (brca1)
03400 DNA repair and recombination proteins [BR:
els03400
]
105030602 (brca1)
Enzymes [BR:
els01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105030602 (brca1)
Protein phosphatases and associated proteins [BR:
els01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
105030602 (brca1)
Ubiquitin system [BR:
els04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
105030602 (brca1)
Multi subunit type E3
BRCC complex
105030602 (brca1)
Chromosome and associated proteins [BR:
els03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
105030602 (brca1)
DNA repair and recombination proteins [BR:
els03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
105030602 (brca1)
BRCA1-A complex
105030602 (brca1)
BRCA1-B complex
105030602 (brca1)
BRCA1-C complex
105030602 (brca1)
BRCA complex
105030602 (brca1)
FA (Fanconi anemia) pathway
Downstream FA components
105030602 (brca1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
zf-C3HC4
zf-C3HC4_2
BRCT_2
zf-C3HC4_4
zf-RING_UBOX
zf-C3HC4_3
zf-RING_2
RING_XB3-XBAT31
zf-Nse
zf-RING_5
Barttin
TRAF3_RING
RTT107_BRCT_5
zf-MIZ
PTCB-BRCT
zf-RING_10
zf-RING_6
zf-ANAPC11
zf-rbx1
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
105030602
NCBI-ProteinID:
XP_012989286
LinkDB
All DBs
Position
LG05:26483200..26522714
Genome browser
AA seq
1565 aa
AA seq
DB search
MGGVGSRVKIVAGKPNSFKAVIYNSAAYECMYTMKLPKAEDVKRGISVIWDTLQCPICLD
LMSTPVSTKCDHQFCKFCMMKLLDSSKRKEANCPVCNTKINKRSLQESPGFQRLVEGLQN
LVQAYEQDTNTTYFTGMYQMRSHMSVTETVQKKTTRDVSEDVWETDRADDEDEGHGDLPM
SCSSTVAAKEGYAKLMGLQDSCPVNLDEDSSLDAKPPASEKETKDSKASTSKTEKQNPEF
EPGITKIVERAPPQTRNQENKLTPHLTDSLCYPEEVENHPVRRSLRNNKRESLSQTNIFE
QRQKKSLEKVSEWLIKTSENVENAECSRDSNANSSSPSSPLEDHLINKEDSPNRKERWKC
LEEQVFGAVYKRDRRGNRSFSPQNRVIADPQPPCLMKEAKILMKLPQKRLNKLTPADFVK
RLRSAENDDIVMNEPPEEHTLNDMANDTTELTYNGVDLQGEKLNELSEDDVKDIPVFSVP
PQKTGRKTSKKVKGKWQDIDGEFQVKGKVNLANNKQKNPCRKKGENSKGENNKAAKMPKP
LVLVGVEEGESDSVAIPKSRPLGQIEVQIESYPISEDIGSPIMRKTRRSQRLQLFTEEVQ
GSKNIIGTSRSIKLPCPDSDCSEMQQSDVAEEDTNMENVVSVRNQNPEKAVRKNGCVLYE
DIRGIDNLECSEKTSCEIIEAQEGSLVEKESIAVVPNTESLCQTDVTGSVALVSSSRSLP
EAGVLLSVPDSMNPSNPIIKPSDDSRSIVPHETSASQAKCINMVEDDRNDSELDTEQLLK
SFKATKRKSFHLGSPSIKRSSFLSNKENATPVKIQTSTDIETGKQQEFPNTTECLTFQSD
SRNRVEYEHSSCSDFIPPSCSPNYSFQEAAQSSHRRFPKSLVTRPTQEFVKSLNHSACDT
TQEVCSNRESVQSPKKMEKTPVETHHQAVDSGMLFPALDASVEALLDPTPEASKQLTVPK
DRLSYTVEDNLWKCSTELESNHSKEPEMAVEPDKRCPVNSNGNIANTESSLTPDDLLPTI
AQSVVIREAERVKESGEGSSHSSIPISLKQRKRRKSQKLESSSESDNSGEEELPPLVQIF
RHSACPTEEESVNLLEDQAREQINSQGSRADCTWAAAKDVLQDVSPLHCPSPDSVPTSQA
SVDLFGTPEDGEVTAGVNGLTQESSQFSNEFITTQQKVAMQEELLRLERMMALVSEALQK
KESSPVDRVTPMLPNGPVLPQPDNSTGIDLQTTTQCGKDNGKRLDARKCAPDDGGNTASS
VPCPKNCKGPAPLPLRRSKREGPGGNRAGQLSRQSGRTLRSSGLRGSPSGLRGSPSGVTG
HSGTTTPSSTKLEVRDIPSVIQPTSTHTSTQAPLRRSAEGKLVLVGSGLSAHEQSMVKKF
AKRMGGSVTSQVTSETTHIIMSTDGDLVCERTLKYFLGIAGRKWVVSFQWISECFKQGYV
LNETQFEVRGDVVNGPDHQGPMRARTTEDRRLLMKDFEICFQGPFTDMTAGQMEWMVELC
GGAVVKEPRLFTGKRARQLVVVQPSSHQSPVNYRALRGEAVVIARGWLLDTVATYTLQSL
DGYRT
NT seq
4698 nt
NT seq
+upstream
nt +downstream
nt
atgggcggggtagggtcacgtgtcaaaatagttgcgggaaaaccaaactcgttcaaggct
gtgatctacaattctgctgcatacgagtgcatgtacaccatgaaactgccaaaggctgaa
gatgtcaaacgggggatctctgtcatctgggatacattgcagtgccctatatgtttggac
ttgatgagtacacctgtatctacaaaatgtgaccaccagttttgcaagttttgtatgatg
aagcttttggacagcagtaagagaaaggaggccaactgtccagtttgtaatacaaagatc
aataaaaggagtttgcaggagagccctggtttccagagacttgtggagggattgcagaat
ctggtccaggcctatgagcaagacaccaacactacctacttcactggaatgtaccagatg
aggagtcacatgagtgtcacagagactgtgcaaaagaaaaccacccgtgatgtctctgag
gacgtctgggaaactgaccgtgccgatgatgaggatgaaggacatggtgaccttccaatg
tcctgctcgtcaactgtagcagctaaggaaggctatgcaaagctaatgggtcttcaagat
tcttgccctgtgaatttggatgaggacagcagcctggatgccaaacctccagccagtgaa
aaagaaacaaaagactctaaagccagcacctctaaaactgagaaacagaatccagaattt
gaaccaggaataaccaagattgttgaaagagctcctccacaaaccagaaatcaagaaaat
aagttaacccctcatcttacagattcattatgctatcctgaagaagttgaaaaccatcct
gtgagacgatctctgaggaataacaaaagagagtcattgagccagaccaacatttttgag
cagagacagaagaaaagtcttgagaaagtgtctgaatggctcattaagacatctgagaat
gttgaaaacgcagagtgctctcgtgactcaaatgcaaatagttcttctccctcctcacct
ttagaggatcacctcataaataaggaggatagtccaaatagaaaagagcgctggaaatgt
cttgaggagcaggtttttggggctgtttacaaacgggaccgaagggggaaccgtagcttt
tcaccacagaacagagtgatcgcagaccctcaaccaccctgtctgatgaaagaagctaag
atcctgatgaaacttccccaaaagaggctaaataaactaacacctgctgactttgtcaag
agactaagatcagcggagaatgatgacattgtcatgaatgaaccacctgaagaacatacc
ttaaatgacatggctaatgacacgacagagttgacttataatggagttgacctgcaagga
gaaaagcttaatgagttgtcagaagatgacgttaaggacattcctgtgttcagtgtgcca
cctcagaaaacagggaggaaaacaagcaaaaaggtgaaaggtaaatggcaggacattgat
ggggaattccaagtgaaagggaaagtgaatttggcaaataacaagcaaaaaaatccttgc
aggaaaaaaggtgaaaactccaaaggcgagaataacaaagcagccaaaatgccaaagcct
ttggttcttgtgggtgttgaagagggtgaaagtgattctgttgcaatacctaagagcaga
cctttaggccagattgaggtccagattgagagttatccgatcagtgaagacattggaagc
ccaataatgaggaaaacgaggaggagtcagagacttcagctcttcacagaggaggtacaa
gggagtaaaaacattattggcacttcaagatccataaagcttccatgtcctgattcagac
tgcagtgagatgcagcagtcagatgtggcggaagaagacactaacatggagaatgtggtt
tctgtgcggaaccaaaatccagaaaaggctgttaggaaaaatggatgtgttttgtatgaa
gacatcagagggattgacaacttggaatgtagcgagaaaacatcctgtgaaatcattgag
gcacaggaagggtcccttgttgagaaggagtccattgctgtagtcccaaatacagaaagt
ctttgtcaaactgatgttactggttcagtcgctttggtatcaagttcaagaagtttacct
gaggcaggtgtcctattgtcagtgcctgatagtatgaatccaagtaatcctattatcaaa
ccatcagatgattcaagatcgattgtaccacatgagacttcagccagtcaagccaaatgc
attaatatggtggaggatgaccgaaatgacagtgagttagacactgagcaactgctgaag
agcttcaaagcaaccaaaagaaaatcattccaccttgggagtccaagtatcaagagaagt
tccttcttgtccaacaaagaaaatgcaacccctgtaaagattcaaaccagcacagatata
gaaacaggaaaacagcaggaatttcctaatacaacggagtgtcttactttccagtcggat
tcaaggaacagggtggaatatgaacattctagctgcagtgatttcatcccaccttcatgt
tcccctaactattctttccaagaagcagctcagagcagtcatagaaggttcccaaagtct
cttgttaccagaccaacacaggaatttgttaagtctttaaaccatagtgcctgtgatacg
actcaggaagtttgcagcaacagagaaagtgtccagagtcccaaaaaaatggaaaaaacc
ccagtggaaactcaccaccaagctgtggattctggtatgctctttccagctttggatgcc
tctgtggaagctctactagatccaacacctgaagcttcaaagcaacttacggtcccaaag
gatagactgtcatacactgtggaggacaacttgtggaaatgttcaacagaactggagagt
aaccacagtaaagaaccagagatggcagtggaaccagacaaaaggtgcccagtgaactct
aatggaaacatagcaaatacagagtcctcattaactccagatgacctccttccgacaatt
gcccaatcggtagttattcgagaagcagagagggttaaagaaagtggagagggaagctct
cactcctccatccccatcagcctaaagcaaaggaaaagaaggaagtcgcagaaactggaa
tcttcttcagagtctgacaacagtggggaggaggaactgcctccccttgtgcaaattttc
agacattcggcttgcccaactgaggaggaatctgtcaatttgcttgaagaccaggccagg
gaacaaataaactcccaggggtctagagctgattgtacctgggctgccgccaaagatgtg
ctgcaagacgtcagtcctctccactgtcccagtcctgacagtgtccccaccagccaagca
tctgtggacctgtttggcacaccagaagatggtgaagttacagcaggtgtcaatggtctg
acacaggaatcttcacaattttcgaacgaatttattaccactcagcaaaaagttgcaatg
caggaggagttgctgaggctggagaggatgatggcgctggtgtctgaggcgctgcagaag
aaggagagttctcctgtggacagagtcacccccatgctcccaaatggcccagtgctgcca
caaccagacaattccacaggcattgatctccagacgaccacacaatgtggcaaggataat
ggaaagagattggacgccaggaaatgtgccccagacgatggaggaaacacagcctcatcg
gtgccgtgtcccaaaaactgcaagggccccgcgccactcccgctccgccgctccaaacgc
gaggggcctggaggaaacagggccgggcagcttagcagacagtcaggaaggaccctaagg
agcagcggtctgagaggttcgcccagcggtctgagaggttcacccagcggggtcacaggg
cacagcggaaccactactccctcatcaaccaagctggaggtcagggacatccctagtgtc
attcagcccaccagcacccatacatcaacacaagcgccgctacggagatctgcagagggc
aagttggtgttggtagggtcaggcctcagtgcacacgaacagtcaatggtgaagaagttt
gccaagaggatgggaggaagtgtgacttcgcaggtgacgtccgagaccacccacatcatc
atgagcacagacggtgacctggtgtgtgagcgtacactgaagtatttcctgggcatcgcg
ggtaggaagtgggtagtcagcttccaatggatttcagagtgcttcaaacaaggatatgtc
ttaaatgagacacagtttgaggtgcgtggagacgttgtgaatggacccgatcaccagggt
cctatgagagcacgtaccacagaggaccgaaggctgctgatgaaggactttgagatctgt
ttccagggcccattcaccgatatgactgctggtcagatggagtggatggtggagctttgt
ggtggggcagtggtcaaggagcctcgtctcttcactggtaaacgggcacgccagctagtg
gtggtacaacccagctcgcaccaatcaccagtaaactaccgggctctgcgcggggaagcc
gttgtcatcgcccgtggctggctgttggataccgtggcaacctacacccttcaaagcctg
gacggctacagaacgtaa
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integrated database retrieval system
