Elizabethkingia sp. JS20170427COW: FGE20_03295
Help
Entry
FGE20_03295 CDS
T06442
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
elt
Elizabethkingia sp. JS20170427COW
Pathway
elt03030
DNA replication
elt03410
Base excision repair
elt03420
Nucleotide excision repair
elt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
elt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FGE20_03295 (ligA)
03410 Base excision repair
FGE20_03295 (ligA)
03420 Nucleotide excision repair
FGE20_03295 (ligA)
03430 Mismatch repair
FGE20_03295 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
elt03032
]
FGE20_03295 (ligA)
03400 DNA repair and recombination proteins [BR:
elt03400
]
FGE20_03295 (ligA)
Enzymes [BR:
elt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FGE20_03295 (ligA)
DNA replication proteins [BR:
elt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FGE20_03295 (ligA)
DNA repair and recombination proteins [BR:
elt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FGE20_03295 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FGE20_03295 (ligA)
MMR (mismatch excision repair)
DNA ligase
FGE20_03295 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FGE20_03295 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
HHH_3
RNA_lig_T4_1
Dna2
HHH_8
HNOB
DUF2624
RNA_ligase
5_3_exonuc
Auto_anti-p27
BRCT_2
zf-FPG_IleRS
UPF0758_N
Motif
Other DBs
NCBI-ProteinID:
QCX52835
UniProt:
A0A5B7UCH7
LinkDB
All DBs
Position
746663..748678
Genome browser
AA seq
671 aa
AA seq
DB search
MSESIQHKIEQLREELHQHNYNYYILDEPSISDFEFDSLLKELQNLEKEYPQYDDPNSPT
HRVGGGITKNFPTIQHQFRMYSLDNSYDFEDLADWEKRIEKTLEGESVEFVAELKYDGAS
ISILYENGKLQQAATRGDGFQGDEITPNVKTISTVPLKLKGDFPERFFMRGEIYLDRKSF
DKINQSREAEGLDPFMNPRNTASGSLKLQDSTEVRKRNLTAVLYQFISDKLPAETHWELL
ENAKKWGFKVSEDHAKLCKNLKEVQDFINYWEENRHQLDFDIDGIVIKVNSLQQQQRLGY
TAKSPRWAMSYKFKAEKVETLLEKVSYQVGRTGAITPVANLSPVLLAGTIVKRASLHNED
IIKKLDLHEGDYVYVEKGGEIIPKIVGINLEKRDLFAQPIHYITHCPECGTELVKLEDQA
AHFCPNDVHCPPQVVGRMIHYVSRKALNIENLGSETIEQLFREGLVKDISDFYHLSKEQL
LPLERMAEKSAQNIINAVEKSKEVPYEKVLFGIGIKHVGETVAKKLAKNFSSIDELKNAS
VEELTSVEDIGEKIAQSIVEFLNNPENWEMIEKLKSYGVQLVRGENSQEVISEVLLGKTF
LFTGKLSLFTREKAEEMVEKHGGKNISSVSKKLNYLVVGEKAGSKLKKAKDIGSITILDE
QQFLDLIGNKS
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaagcatacaacataaaatagaacaactccgagaggaactacatcaacataat
tacaattactacatcttagatgaacctagtatttccgacttcgagtttgatagtcttctt
aaagaacttcaaaacttggaaaaggaatatcctcaatacgatgaccccaactccccaact
catagagtaggtggagggattaccaaaaacttccctaccatccaacatcaattcaggatg
tattctctagacaattcttatgattttgaagaccttgctgattgggaaaagcgtatcgaa
aaaactttggaaggagagtctgtagaatttgtagctgaactaaaatacgatggtgcctcc
atctccattctctatgaaaacggtaagcttcagcaagcggctacccgtggagatggcttc
caaggagatgaaattactcccaatgtaaagacgatttctacagttcctttaaagttaaaa
ggagatttccctgaaagattcttcatgagaggagaaatttacttggatcgtaaatccttc
gacaaaatcaaccaatctcgggaagccgaaggcttagatccatttatgaatcctagaaat
acggcaagcggaagtctaaaacttcaagattctacagaagtgcgtaaaagaaatcttact
gccgtattatatcaatttatcagtgacaagcttcctgctgaaacccattgggaattatta
gaaaatgctaaaaaatggggattcaaagtttctgaagatcatgccaagctttgtaaaaac
ctaaaagaagtacaagactttatcaattactgggaagagaatcgccatcagctagatttt
gatatagatggcatcgttattaaagtcaattccctacaacaacagcaacgattgggctat
actgccaaatctcctagatgggcaatgtcctataaatttaaagctgaaaaagtagaaacc
ttattggaaaaagtaagctaccaagtgggaaggacaggtgctattactccagtagccaac
ctttcaccagtgttactagccggaactattgtaaaaagagcttctttacataacgaagat
atcatcaagaaactagatttgcacgaaggtgactatgtttacgttgaaaaaggaggagag
attattcctaaaattgtaggaataaatcttgaaaaaagagatctctttgcgcaacccatc
cactatattacccattgccctgagtgtggtaccgagctggtaaaactagaagatcaagct
gctcatttttgccccaatgatgtacactgtccgccgcaagtggttggccgtatgattcac
tatgtttctagaaaagctttaaatatcgaaaacctaggcagcgaaactatagagcaactc
ttccgtgaaggattagtgaaagatatttccgatttctatcaccttagcaaagaacagctc
cttccccttgaaaggatggccgaaaaatcagcacaaaacatcatcaatgcggttgaaaaa
tctaaagaagtaccttatgaaaaagtcctctttgggataggaattaaacatgttggcgaa
acggtggctaaaaaactagctaaaaatttcagctctattgatgaattaaaaaatgccagt
gtagaagagctaacttccgtagaagatattggtgaaaagatagcccaaagtattgttgaa
tttctaaacaatccagaaaattgggagatgatagaaaaactaaaatcttatggagtacaa
ttggtaagaggtgaaaattcccaggaagtcatcagtgaagtcttactcggaaaaaccttt
ttattcacaggaaagctatcgctatttacccgagaaaaggcagaagaaatggtggaaaaa
cacggaggaaaaaatatatcttcagtctccaaaaagctcaattatttagtagtcggagaa
aaagctggcagtaagcttaaaaaagctaaagatattggcagtatcaccattttggatgaa
cagcaattcttagatttaataggaaataaatcataa
DBGET
integrated database retrieval system
