Escherichia coli UM146: UM146_18390
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Entry
UM146_18390 CDS
T02000
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
elu
Escherichia coli UM146
Pathway
elu03030
DNA replication
elu03410
Base excision repair
elu03420
Nucleotide excision repair
elu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
elu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
UM146_18390 (ligB)
03410 Base excision repair
UM146_18390 (ligB)
03420 Nucleotide excision repair
UM146_18390 (ligB)
03430 Mismatch repair
UM146_18390 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
elu03032
]
UM146_18390 (ligB)
03400 DNA repair and recombination proteins [BR:
elu03400
]
UM146_18390 (ligB)
Enzymes [BR:
elu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
UM146_18390 (ligB)
DNA replication proteins [BR:
elu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
UM146_18390 (ligB)
DNA repair and recombination proteins [BR:
elu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
UM146_18390 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
UM146_18390 (ligB)
MMR (mismatch excision repair)
DNA ligase
UM146_18390 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
UM146_18390 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ADN73024
LinkDB
All DBs
Position
complement(3820084..3821766)
Genome browser
AA seq
560 aa
AA seq
DB search
MKVWMAILISILCWQSSAWAVCPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGV
YDQLSARLTQWQRCFGNETRDVMMPPLNGAVMHPVAHTGVRKMADKNALSLWMRERSDLW
VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANSTLQGE
IFLQREGHIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPHLMTDRLKDLA
TAGFTLTQTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVVRAAKEPESRHWLPGQAEWL
VAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKVQRVNIGSVRRWQEWDIA
PGDQILVSLAGQGIPRIDDVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWL
GSKQVLGLDGIGEAGWRALHQTHRFEHIFSWLLLTPEQLQNTPGIAKSKSAQLWHQFNLA
RQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQQPGTGSGRARQVIEWKEN
AQIKKLGSWLAAQQITGFEP
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtatggatggcgatattaataagtatcttgtgctggcaatcatcggcgtgggcg
gtctgtccggcctggtcgccagccagagcacaggaagaaatttcccgcctgcaacagcaa
ataaaacagtgggacgatgactactggaaggaagggaaaagtgaggtggaagacggtgtt
tacgatcagttaagcgcccgtctcacgcagtggcaacgctgttttgggaacgagactcgc
gatgtgatgatgccgcctttaaacggtgcggttatgcatccggttgcccatacgggtgta
cgcaaaatggcggataaaaacgcattaagtctgtggatgcgcgaacgtagcgatctttgg
gtgcagccaaaagttgatggcgttgcggtaaccctggtttatcgggacgggaaactgaac
aaagcaatcagtcgcggtaatggcctgaaaggcgaggactggacgcagaaagttcgctta
atttccgctgtgccgcaaaccgttagcgggcctttagccaacagcacgcttcagggggaa
atatttctccagcgcgaggggcatatccaacaacaaatggggggaataaatgcccgcgca
aaagttgctggcctgatgatgcgccaggggaatagcgatacgctaaactcactggctgtt
tttgtctgggcatggccggatggaccgcatttaatgaccgatcgtttaaaggatctggct
accgcaggttttactttaacgcagacgtatacccgcgcggttaaaaatgctgatgaggtt
gcgcacgtacgcaatgagtggtggaaagcaaaattacccttcgtcaccgatggcgtggtt
gtgcgagcggcgaaagaacccgaatcccgtcattggttaccgggccaggcggagtggctg
gtggcctggaaatatcaacctgtagctcaggttgccgaagtgaaggcgattcagtttgcg
gtgggtaagagcggtaaaatatcggtggtggcgtcactcgcacctgtcatgctggatgat
aaaaaagtccagcgggtgaatattggttccgtcaggcgctggcaggagtgggatattgcg
cctggtgatcagatcctcgtcagccttgccggtcaggggattcctcgcattgatgatgtg
gtctggcgcggagcagaacgtacaaaaccgacaccaccagaaaaccgctttaactcgttg
acctgctactttgcttctgatgtttgtcaggaacagttcatttcacgcttagtctggctg
gggtcaaaacaggttctggggcttgatggcattggtgaggccggctggcgcgccctgcat
cagactcatcgctttgagcatatcttttcctggcttttattaacgccagagcaattacag
aacacgccggggatcgcgaaaagtaaaagtgcgcagttatggcatcagtttaatctggct
cgtcagcagccttttactcgctgggtgatggcaatgggaataccgctaacccgggcggcg
cttaatgccagtgatgaacggtcctggtcgcaacttttatttagcacggaacagttctgg
cagcagcagccggggactggatcggggcgcgccagacaggttattgaatggaaggaaaat
gcgcaaatcaagaagctgggcagttggctggctgcccagcagatcacaggttttgaacct
tag
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