Escherichia coli W: ECW_m3923
Help
Entry
ECW_m3923 CDS
T02002
Symbol
ligB
Name
(GenBank) DNA ligase, NAD(+)-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
elw
Escherichia coli W
Pathway
elw03030
DNA replication
elw03410
Base excision repair
elw03420
Nucleotide excision repair
elw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
elw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ECW_m3923 (ligB)
03410 Base excision repair
ECW_m3923 (ligB)
03420 Nucleotide excision repair
ECW_m3923 (ligB)
03430 Mismatch repair
ECW_m3923 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
elw03032
]
ECW_m3923 (ligB)
03400 DNA repair and recombination proteins [BR:
elw03400
]
ECW_m3923 (ligB)
Enzymes [BR:
elw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ECW_m3923 (ligB)
DNA replication proteins [BR:
elw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ECW_m3923 (ligB)
DNA repair and recombination proteins [BR:
elw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ECW_m3923 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ECW_m3923 (ligB)
MMR (mismatch excision repair)
DNA ligase
ECW_m3923 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ECW_m3923 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ADT77262
UniProt:
E0J5B7
LinkDB
All DBs
Position
complement(4025360..4027042)
Genome browser
AA seq
560 aa
AA seq
DB search
MKVWMAILISILCWQSSVWAVCPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGV
YDQLSARLTQWQRCFGSEPRDVMMPPLNGAVMHPVAHTGVRKMVDKNALSLWMRERSDLW
VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANSTLQGE
IFLQREGHIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLMTDRLKELA
TAGFTLTQRYTRAVKNADEVARVRNEWWKAKLPFVTDGVVVRGAKEPESRHWLPGQAEWL
VAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKVQRVNIGSVRRWQEWDIA
PGDQILVSLAGQGIPRIDDVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWL
GSKQVLGLDGIGEAGWRALHQTHRFEHIFSWLLLTPEQLQNTPGIAKSKSAQLWHQFNLA
RKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKEN
AQIKKLGSWLAAQQITGFEP
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtatggatggcgatattaataagtatcttgtgctggcaatcatctgtgtgggcg
gtctgtccggcctggtcgccagccagagcacaggaagaaatttcccgcctgcaacagcaa
ataaaacagtgggacgatgactactggaaggaaggaaaaagtgaggtggaagacggtgtt
tacgatcagttaagcgcccgtcttacgcagtggcaacgctgctttgggagcgagccccgc
gacgtgatgatgccgcctttaaatggtgcggttatgcatccggttgcccatacgggtgta
cgcaaaatggtggataaaaacgcattaagtctgtggatgcgagaacgtagcgatctttgg
gtgcagccaaaagttgatggcgttgcggtaaccctggtttatcgggacgggaaactgaac
aaagcaatcagtcgcggtaatggcctgaaaggcgaggactggacgcagaaagttagctta
atttccgctgtgccgcaaaccgttagcgggcctttagccaacagtacgcttcagggggaa
atatttctccagcgcgaggggcatatccaacaacaaatggggggaataaatgcccgcgca
aaagttgctggcctgatgatgcgccaggacgatagcgacacgctgaattctctgggcgtt
tttgtctgggcatggccggatggaccgcagttaatgaccgatcgtttaaaggagctggct
accgcaggttttactctaacgcagaggtatacccgtgcggttaaaaatgctgatgaggtt
gcgcgcgtacgcaatgagtggtggaaagcgaaattacccttcgtcaccgatggcgtggtt
gtgcgaggggcgaaagaacccgaatcccgccattggctaccaggccaggcagaatggctg
gtggcctggaaatatcaacctgtagctcaggttgccgaagtgaaggcgattcagtttgcg
gtgggtaagagcggtaaaatatcggtggttgcgtcactcgcacctgtcatgctggatgat
aaaaaagtccagcgggtgaatattggttccgtcaggcgctggcaggagtgggatattgcg
cctggtgatcagatcctcgtcagccttgccggtcagggtattcctcgcattgatgatgtg
gtctggcgcggtgcagaacgtacaaaaccgacaccaccagaaaaccgctttaactcgttg
acctgctactttgcttctgatgtttgtcaggaacagttcatttcacgcttagtctggctg
gggtcaaaacaggttctggggctggatggcattggtgaggccggctggcgcgcgctgcat
cagactcatcgctttgagcatatcttttcctggcttttattaacgccagagcaattacag
aacacgccggggatcgcgaaaagtaaaagtgcgcagctatggcatcagtttaatctggct
cgtaagcagccttttactcgctgggtgatggcaatgggaataccgctaacccgggcggcg
cttaatgccagtgatgaacggtcctggtcgcaacttttatttagcacggagcagttctgg
cagcagctgccggggactggatcggggcgcgccagacaggttattgaatggaaggaaaat
gcgcaaatcaagaagctgggcagttggctggctgcccagcagatcacaggttttgaacct
tag
DBGET
integrated database retrieval system
