Epinephelus lanceolatus (giant grouper): 117250201
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Entry
117250201 CDS
T07331
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ely
Epinephelus lanceolatus (giant grouper)
Pathway
ely03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
117250201 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ely03400
]
117250201 (lig4)
Enzymes [BR:
ely01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
117250201 (lig4)
DNA repair and recombination proteins [BR:
ely03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
117250201 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT_2
DNA_ligase_A_C
BRCT
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
117250201
NCBI-ProteinID:
XP_033472180
LinkDB
All DBs
Position
24:complement(13015940..13022244)
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AA seq
908 aa
AA seq
DB search
MEGTSKSVAAGQPSVAAQVPFLHLCTTLDKIQKSKLRPDKSKILRDFIESWRNFHSVLHK
DNPKTTDSFYPAMRLIVPPFERERMAYGIKENMLAKLYIDVLGLPKNGPEANKLLNYRAP
TTSQGDAGDFANMAYFVLKKRCTSQGNLSIKEVNDFLDSVAINNASKQKDLVKKSLLHLI
TQSTALEQKWLIRMILKDMKLGISKETVLQVFHPDAAELYNVNTDLNKVCQQLHNPSVSL
SEVSIGLFSAFKPMLAAVANIRTVEKQMGNSPFYIQTKLDGERIQLHKDGDVYKYFSRNA
FEYTQQFGGSPLEGSLTPYIHNVFKNHVVNCILDGEMMAYNPTTEAFMQKGSKFDIKKLM
DDSELQTCFCVFDVLLVNDQKLGRETLKKRYETLETVFTPVKGRMHLVPKADARTMQEVV
NALNDAIDNREEGIMVKDPSSIYIPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKGR
RGGMMSHFLCAVAEAPKPGEKPSVFHTLCRIGSGYTMKELYDLGLRLAKHWKVYRKNDPP
ASILCGTEKPEAYIEPCNSVIIQVRAAEIVSSDMYKTNCTLRFPRIEKIRDDKEWHQCMT
LAELDQFRSKASGKLASRHLCIDGDEPQKKKRKLPVKPKKVVGIIDHFKPQDLSGVTKET
DMFEDVEFCILNGTEDHPKAELEKGVARCGGIVVQNPGRDTYCVIAGVENMRVKNLVSCN
QHDVVWAAWLLECLDQKEVVPWQPRHMIHMSPSTREHFAKEYDSYGDSYFVDTDEQQLQE
VFDRISNADAAVNISQVEQRYGWEDLPTSMFRPFEVYMDGYADIGDPETAIPATCLDIRA
LEFRYHGGKVVQKLKEGVSHVIITEETRLLELRTLRRCFRKKFKIVRDSWVTDSIKAGYL
MNDNDYLV
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atggagggaacttctaaaagcgttgctgcaggtcagccctctgttgctgctcaggttcct
ttccttcacctttgtaccactttagacaaaatccagaagtctaaactccgtccagataaa
tccaagatccttagggatttcattgagtcatggaggaactttcactctgtgctccacaag
gacaaccccaaaacaacagactccttctacccagctatgcgcctcatagtgccgcctttc
gaacgagagcgtatggcatatggcatcaaagagaacatgttagctaaactctacatcgat
gtattaggacttccaaagaacggtccagaggccaataaactgttgaactaccgtgctccg
actacatcccaaggagatgctggagactttgccaacatggcgtactttgtgctgaagaaa
cggtgcacgagccagggaaacctcagcatcaaagaagtcaatgactttctggattcggtg
gcgatcaataacgctagcaagcagaaggatcttgtgaaaaagagtctgctgcacctcatc
acccagagcacagctctcgagcaaaagtggctcatcaggatgattctgaaggacatgaag
ctcgggatcagcaaagaaactgttctccaggtcttccacccggatgctgctgagctctac
aatgtcaacacggacttaaacaaggtatgccagcagctccacaacccctccgtgtcttta
agcgaagtctctatcggactcttctctgctttcaagccaatgttggcagccgtggccaac
atccgcactgtggagaaacagatgggaaacagtcctttttacattcagaccaaactggat
ggagagcgtatacagctgcacaaagacggggacgtgtacaagtactttagcagaaatgct
tttgagtacacccagcagtttggaggatccccactggagggctcactcacaccttacatc
cacaacgtttttaaaaaccatgttgtaaactgcatcctcgatggtgagatgatggcgtac
aatccgaccacagaggccttcatgcagaaggggagcaaatttgacatcaagaaactcatg
gacgactctgagctacagacgtgcttctgcgtgtttgatgtgttgttggtcaatgaccag
aagcttggcagggaaacactgaagaagcgctacgagactcttgagacagttttcactcca
gtcaaggggaggatgcacctggttccaaaggccgacgctagaaccatgcaggaggtagtg
aatgcgctcaatgacgccattgacaacagagaagaggggatcatggtgaaggatccttcg
tccatatacataccagacaagcggggggagggatggctgaaaatcaagccagaatatgtg
gacggcttgatggatgagctcgacctgctgattgttggtggctattgggggaaagggaga
cgtggtggtatgatgtcccatttcttatgtgctgttgccgaagctccaaagcctggcgag
aagccctcagttttccacactctctgtcgcatcggctctggctacaccatgaaggagctg
tatgacctcggtttaaggctagccaagcactggaaagtctatcgaaaaaatgaccctccc
gcatccatcctgtgtggcacagagaaaccagaagcctacatcgaaccctgcaactcggtc
atcatccaggtccgggcggctgaaatagtctcaagtgacatgtataaaaccaactgcact
ctgcgtttccccaggatcgagaagatccgcgatgacaaggagtggcaccagtgcatgact
ctggcagagctggatcagttccgcagtaaggcatctgggaagctagcctcacggcacctt
tgcatcgatggtgacgaaccgcagaagaagaagcgcaagctgccagtcaaacccaagaag
gtggtggggatcatcgaccactttaagccccaggacctctctggggttaccaaggagaca
gatatgtttgaggatgtggagttctgtatcctgaatggcacagaggatcaccccaaggca
gagctggaaaagggcgtggccaggtgtggaggtatcgtggttcaaaacccaggaagggac
acctactgcgtgattgccggcgtggagaacatgcgcgtgaagaacctggtttcttgcaac
cagcacgatgtggtgtgggccgcctggctgctggagtgccttgaccagaaggaagtggtc
ccgtggcaaccgcgtcacatgatccacatgtcaccctccaccagagagcactttgccaag
gagtatgacagctacggcgacagctactttgtggacaccgacgagcagcagctgcaggag
gtgtttgaccggatcagcaacgcagatgcggcggtgaacatcagccaggtggagcagcgg
tatggctgggaggaccttcccaccagcatgttcagacccttcgaggtttacatggacggc
tacgccgacataggagacccggaaaccgccatacctgccacctgtttggacatcagggcg
ctggagtttcgataccatggagggaaggtggtgcagaagttaaaggaaggagtctctcat
gtcattatcacagaggaaacaagacttctggagttaaggactctgaggcgctgcttccgg
aagaaatttaagatcgtaagagactcatgggtgactgactctatcaaagcagggtatctg
atgaatgacaatgactacttagtttga
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