Epinephelus lanceolatus (giant grouper): 117264627
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Entry
117264627 CDS
T07331
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
ely
Epinephelus lanceolatus (giant grouper)
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ely03036
]
117264627 (smchd1)
03400 DNA repair and recombination proteins [BR:
ely03400
]
117264627 (smchd1)
Chromosome and associated proteins [BR:
ely03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
117264627 (smchd1)
DNA repair and recombination proteins [BR:
ely03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
117264627 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
HATPase_c_3
SMC_hinge
HATPase_c
Psb28
Motif
Other DBs
NCBI-GeneID:
117264627
NCBI-ProteinID:
XP_033494631
LinkDB
All DBs
Position
13:26746841..26783231
Genome browser
AA seq
1970 aa
AA seq
DB search
MSNRGAQRLPAASMERGRVRRRIHVFDRRSKRKEQAILDASGLDYNDFLQLVREKFGIRP
HETFVLATTDRTVLDFDKFEEFQDGSTLLLLEHEDQALVAATEERIKFEPHYDTLTGSGT
YEYYASQGQNPLSYALAELIDNSLSATAKNTGVRTIEIRMMFDESLGKHAVIVLDNGCGM
TSKQLNNWAVYRLSKFSRKNGSLGSNQEDYVRPDPVPRSLNSDISYFGVGGKQATFYIGT
STRMITKPAGSPDVHELVLSKADFERKEKNKEEIYSETIRHRKPGDSSHVNKPDERFLHP
LITEELEKESFTAVVITEILPDHIRFLKQNFDVWTRQLANVYHYYIHGVNGRDMRSSSTN
SDHLSKIDIQITLREKPPRIPRVMNIREVDNDMQTLYINSAADSFEFKAEQDGGTVDGVI
RYHPFLYDKETYPEVPDAMQATPDDDDDTDNESGVLHQARGKRPIFNCYWNGRLIPYTTV
DEFDWCAPNKDSKEIAECYSRISGVLFTDDRFKVSTNKLTFMELEQRLRSKDAIFTRLVN
GQRQRGNMLKEFTQWLKNCHEKWDKQIQFLGFQGTITRTDVPVKKMQEPWATFSSIEWDG
KIYKKGQLVKSRKTQPILYGSVVRFLLYGKHDGNVFATGGQVELVLEPKAFHDKNKTIPI
SKIDKTATDKAIKTYIDNDSARLPDILTVDWPSKNPWPQNAVRPAGSVIGELQIQILNKK
GDSLSKMPSVGQGTGKRLSIERRIIHHSPKGAQEISLCVAQHSAQWGFWFKESEKLTILG
KYTLLLVTILKESNATSFGGRELPSFKLNFTITEGSAEKFLIGAVNSTLHVGVPFNIPLL
IKDGYDHSATPPPDLKPVLKCSGLDLSYETADSNGTTFTIRGVKALGRVLNYQQSKTYDL
KVTLPGLKKDTQTIKISLLPGNPHSLHVKPEENPIRVQNGDPVTFNVEIHDVAGNITAHP
KQNVRCQIEGFPAVTTDCSTTGAGQLVTKPINLKIIKGEPQYLKAHFDMPSQKKIALVMR
ELEVVPGTRVARMELCSEDDENLVLRNDEKIEWLAGALLENLFYKLYDEADREVPHTAEI
ASRIKVNWTGDVNMEDLVQGKLPDVQVPTQVGAERFYQVSYQDHSVSVSFSIAPRPDEPT
QLKATLLQTTVKLGEILPGNIDLELVDQYGNPTKTLTSTCKNHMTVEAEDLDKSSIVFTW
QESSKSVLVTGVRFQSGAPGSKVMCFTYRSFVERVMVKVTAGVPAQLKLVSGPKQPLQVL
NDQGIGTPFIVQLCDEWGNPCIDQRVVVHLKSSPPTLKVTADVTSRPVNKEGKASFTVNS
MSGPKGYYQLVFRGSLNQKPIPGPSVNLTIIPDPTKPVSLSVEYNTNAKFPAGGVFPVFS
VIVVSDEGSPITTLNPAAASMLLWKGAQAENTPPQTATEMKCSKPKENESKDRFYFRDKE
IPEQVGKHIIQFSLRIDKTKVLLSKQIPINVVANQPVKLGPDSQPQAPVVSHSKVLAHRT
LVDNLTLRIMDSYGNPAGQDLEGNVVISIKNSNGDGNKSLPLFEGKNTSLKISLVEGKAH
IPRLAIMENSPGEDGSTYILLFNSEVSMLPTALAPFELPFHFYNDVENQRKVSELSRKKE
ELSTTVAMYKETFSTYGELLQMLTNHQLGANRKEAELRQELSRRNMPTAQTIAGIDKLLN
EKKTEIDRILRMPRRVCSISDPFKGQQDVLGKVGQLAFVQDDDAARVISWHIRGDMDCVI
TRTSAAAERIFKDTVGRQQVMPLDTVYVPPGERPLPHIRGGSMLFHPPGNPVLARDLLIY
PEDQESCRTAFKIILADTILIDDLSSANNYRKAVAQNKMHCPTILTRQGDRVSSKGKFGG
TQNRAPRMNTPDMFGAPLPPNYYTVREHIDLLNQHRAALEKKDKATKDRDDHYSQMKSPE
MMRKQQEMEEKKKQLEEIERQLVSSPVRPVKRGLVGVGEPSGITPKRAKQ
NT seq
5913 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaccgaggggcccagcgtctccccgcagcctccatggagagaggaagagtccgc
aggaggatacatgttttcgaccgccgatcaaagaggaaggagcaggctatacttgatgcc
agtggtctggattacaatgacttccttcagcttgtgcgagagaaatttggaatccgtcca
catgaaacatttgtgctggccacgacggacagaacagtcctggattttgacaaatttgag
gagtttcaggatggcagcaccctcctcttgttggaacacgaggaccaggctctggtagcg
gctacagaggagcgcatcaaatttgaacctcattatgatacattgactgggagtggcacg
tatgagtactatgctagtcagggccagaatccattgtcgtacgcacttgctgagctgatt
gacaactctctttcggccacagctaaaaacacaggagtgaggacgatagagatacggatg
atgtttgatgaaagtctcgggaaacatgcagtgatagtactagataacggatgcgggatg
acctcgaaacagctcaacaactgggcagtgtacagactctctaaattttcaaggaaaaat
gggtcacttggaagtaatcaggaggattatgttcggcctgatcctgtccctcgtagtctc
aacagtgatatatcctactttggtgttggaggaaaacaggccactttctatatcggaacc
tcaaccaggatgatcactaaaccagcaggctccccagatgtccatgagctggttctgtca
aaggcggactttgagagaaaagagaagaacaaagaggagatttacagtgagaccataagg
cataggaagcctggggactcttcacatgtgaataaacctgatgagcgctttcttcatccc
cttatcactgaggaacttgagaaggaaagcttcacagctgtggtcattacggaaatcttg
cctgaccatatcagatttctgaagcagaattttgacgtgtggacgagacagcttgccaac
gtgtatcactattacattcatggagtcaatggaagggacatgaggagcagctctacaaac
tcagatcatctctctaaaattgacattcagatcactttgcgcgagaagcctcccagaatt
ccccgtgtgatgaatattagggaagttgacaacgacatgcagactctctacataaattct
gctgcagacagttttgagtttaaggccgaacaagacggtggcactgtcgacggagtcatt
cggtatcatcctttcctctatgacaaggaaacatatcctgaagtccctgatgccatgcaa
gccactcctgatgatgatgatgataccgataatgagtctggagtcctgcatcaggcaaga
gggaaaaggccgatatttaactgttactggaacggacggctcataccttacacaacagtg
gatgagtttgattggtgcgcacccaataaagactcaaaggagattgcagagtgttacagt
cggatttcaggggtgcttttcactgatgacagattcaaggtcagcacgaataagctcacc
ttcatggagctggagcagagactaaggagcaaggacgctatcttcacacgccttgttaac
ggacagagacaaagaggtaacatgctgaaggagtttacacagtggctaaaaaactgtcac
gagaagtgggacaagcaaattcagttcctcggctttcaggggaccataacacgaacagat
gtgcctgttaagaaaatgcaggagccctgggcgactttctcctccattgaatgggatggc
aaaatttacaaaaaaggccaactcgtgaagtctcggaaaacgcagcccattctgtatggt
agtgtggttcgttttctgctgtatggaaaacacgacggaaacgtctttgccacaggggga
caggttgaattggttctggaacccaaagcatttcatgacaaaaacaagacaatacccatt
tccaagattgacaagaccgccactgataaagccatcaagacatacatcgacaatgactct
gccaggcttccagatattctgacagtggactggccatctaagaacccctggccacagaat
gctgtacgtccagccgggagtgtcataggtgaactgcaaattcaaattctgaacaagaag
ggagattctttatccaagatgccatcagtgggtcaggggacagggaaaagactgagtatt
gagcgcagaatcatccatcacagtcccaaaggagctcaagagatttccctttgtgttgcc
cagcattcagcccagtggggtttctggttcaaagaaagtgagaaactgaccatcctggga
aagtatactctgttgctggtcactatattaaaggaaagtaatgctacctccttcggaggc
agagagcttccaagcttcaaactcaacttcaccatcactgagggcagtgctgagaaattc
ctaatcggtgcagtgaactccactcttcatgtgggagtgccattcaacattcctctgctg
ataaaagacggttatgaccactcagcgacccctcctcctgatctcaaacctgtactcaaa
tgcagtggcctggacctgagttacgagacagcggacagcaatggcaccacgttcaccatc
agaggtgtcaaagcattaggaagagtcctgaattaccagcagtcgaagacatatgacctg
aaagtaaccctgcctggcctgaagaaagacacacagactatcaagatcagtcttcttcct
ggtaatccacattccctccatgtgaagccagaagagaacccaatcagggtacagaatgga
gaccctgttacgtttaatgttgaaattcatgatgtggctggaaacatcactgctcacccc
aaacagaacgttcgctgccagattgaagggtttccagcagtgacaactgactgtagcacc
acaggagctggacagcttgtgacaaagcccataaacctgaaaataatcaagggagaacca
caatacctcaaagctcattttgacatgcctagtcagaagaagattgcattggtcatgagg
gagctggaggtggtgcccggcacaagagttgccaggatggagctctgcagtgaggatgat
gagaacttggtgcttagaaacgatgaaaagatagaatggctggccggagccttgctggag
aacctgttctataaactgtatgatgaggcggatagagaggtccctcacactgctgaaata
gcctccaggatcaaggttaactggacaggagatgtaaatatggaagatttggtccagggg
aagctgcccgatgtgcaggtgcccacgcaggtgggggcagagcgcttctaccaggtgtcc
taccaagaccacagtgtctctgtctccttcagcattgcgcctcgtccagatgaaccaaca
cagctgaaagcaactcttctccaaaccacagtgaaactgggtgaaatcctacctggaaac
atcgacttggagcttgtggaccaatatggtaatccaaccaagacgctcacatccacctgt
aagaaccacatgactgtggaagcggaggatctggacaaatcgtccatcgtctttacatgg
caggagagcagcaagtctgtcctggtaacgggggtgcgtttccagtctggagctcctggc
agcaaagtgatgtgcttcacctacaggagctttgtggagcgcgtcatggtcaaagtgact
gctggcgtccctgcacagcttaaactagtcagtgggccaaagcagcctttgcaggtgttg
aatgaccaaggcatcggcacaccatttatcgtccaactgtgtgacgagtggggaaacccc
tgcatagaccagagggttgtggtacatttgaagtcctcacctccaacactgaaggtgacg
gcagatgttacctcacgacctgtgaacaaagaaggcaaagcctctttcactgttaacagt
atgagtggaccaaaggggtactatcagctggtgtttagaggctcactcaaccagaaaccc
atcccaggtccatcagtgaatctcactatcatccctgatcccaccaaacctgtcagcctg
tcagtggagtataacaccaatgccaagtttcctgctggaggtgtctttccagtcttctct
gtcatcgtggtgtctgatgaaggaagcccgattacgacattaaaccctgctgctgcctcc
atgttgctgtggaagggagcgcaagcagaaaacacgcctccacaaacggccactgagatg
aagtgtagcaaacccaaggagaacgagtcgaaagaccgtttttacttcagagacaaagag
atcccagagcaggttggaaagcacatcatccagttttctctacgaatagacaaaacaaaa
gtcctactcagtaaacagattcctataaatgtggtggccaatcaacctgtcaaactgggt
cctgactctcagccacaagccccagttgtttcccacagtaaggtccttgcccacagaacc
ttggtggacaatctgactctgaggataatggattcatatggaaacccagcggggcaggac
ctggaggggaatgtggtcatttctataaaaaactcaaatggagacggcaacaaaagcctc
cctttgttcgaaggcaaaaacacaagcttgaaaatcagcctggtagaaggaaaggcccac
atccccaggctggctatcatggagaacagccctggtgaggatggaagtacatacatcctc
ctcttcaactctgaagtgtcaatgcttcctacggccctggctccttttgagctccccttc
catttctacaatgatgtagagaaccaacgtaaagtgtctgagctgtccaggaagaaagaa
gagctcagtactactgttgctatgtataaagaaaccttttctacatatggtgaactcctt
caaatgctgacaaatcatcagctgggtgcaaatagaaaagaggctgagcttagacaagag
ctgtccaggaggaatatgccaactgcccaaactatcgcgggtattgacaaacttttaaat
gagaagaaaactgaaatcgacaggattctgagaatgcccagaagagtttgctccatcagt
gatcccttcaaggggcagcaggatgttttgggaaaggttggccagctggccttcgtgcag
gacgacgatgctgcgagggttatctcctggcatatcaggggtgacatggactgcgtcatc
accagaacgagcgcagcagcagagaggatctttaaggacaccgtaggcaggcagcaggtc
atgcccctcgacactgtttatgtgccaccaggcgaaagaccactgccgcacattagaggt
ggcagcatgctctttcatccccctgggaacccggtcctcgccagagacctcctgatttac
cctgaggaccaggagagctgtcgcacggcttttaaaatcatcctcgcagacactattctg
attgatgacctcagctctgcaaataactacagaaaagcggtggcgcagaataagatgcac
tgtcccaccatcctgaccaggcagggggacagggtcagctccaagggaaagttcggaggc
acacagaacagagccccacggatgaacacaccagacatgtttggagcccccctcccgcca
aattactacactgttcgtgaacatatagacctgctcaaccagcatcgggcagctctggag
aagaaggataaggcaacaaaggatcgtgatgatcactacagccaaatgaagtctcctgag
atgatgagaaagcaacaggagatggaggagaagaagaaacagctggaggagatagaaagg
caactggtgtcctccccagtaagaccagtgaaacggggtctcgtgggtgttggtgagccg
tccggcatcaccccaaagagagcaaagcagtga
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