Elizabethkingia sp. 2-6: FCS00_04620
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Entry
FCS00_04620 CDS
T06039
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
elz
Elizabethkingia sp. 2-6
Pathway
elz03030
DNA replication
elz03410
Base excision repair
elz03420
Nucleotide excision repair
elz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
elz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FCS00_04620 (ligA)
03410 Base excision repair
FCS00_04620 (ligA)
03420 Nucleotide excision repair
FCS00_04620 (ligA)
03430 Mismatch repair
FCS00_04620 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
elz03032
]
FCS00_04620 (ligA)
03400 DNA repair and recombination proteins [BR:
elz03400
]
FCS00_04620 (ligA)
Enzymes [BR:
elz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FCS00_04620 (ligA)
DNA replication proteins [BR:
elz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FCS00_04620 (ligA)
DNA repair and recombination proteins [BR:
elz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FCS00_04620 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FCS00_04620 (ligA)
MMR (mismatch excision repair)
DNA ligase
FCS00_04620 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FCS00_04620 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
RNA_lig_T4_1
5_3_exonuc
BRCT_2
zf-ribbon_3
RNA_ligase
Dna2
zf-IS66
A2L_zn_ribbon
Motif
Other DBs
NCBI-ProteinID:
QCO45691
UniProt:
A0A4V1DZI8
LinkDB
All DBs
Position
1007682..1009688
Genome browser
AA seq
668 aa
AA seq
DB search
MSENIQQKIEELREELHQHNYNYYILDEPSISDFEFDAKLKELQDLETQHPEFNDPNSPT
LRVGGGVTKNFPTVQHQFRMYSLDNSYDFNDLEDWEKRIIKTIDEPVEFVAELKYDGASI
SILYENGKLIQAVTRGDGFQGDEITGNVRTISDVPLKLKGEFPERFYMRGEIYLTRKNFD
KLNALREEEGLDPFMNPRNTASGSLKMQDSGEVRKRGLSAVLYQYIAENFPAETHWDLLA
NAKQWGFRVSEDQAKLCRTLDDVKNFINYWDQERHNLPFEIDGIVIKVNSLKHQRELGYT
AKSPRWAMAYKFKAEKVETELLSVSYQVGRTGAITPVANLRPVLLAGTTVKRASLHNEDI
IKKLDLHENDFVYVEKGGEIIPKIVGVNTEKRTSESKEIEYIKHCPECGTELVKIEDQAI
HFCPNELHCPPQVVGRMIHYVSRKALNIENLGGETIEQLYREKLIENPADLYTLTKEQLL
PLERMAEKSAQNILDGVEKSKEIPFEKVLYGIGIKHVGETVAKKLVKNFPSIEELKNATE
EELCQVEDIGAKIAVSITEFFANQENLLMIERLKNYGVQLEKGENTNDVISNVLDGKTFL
FTGKLSLFTREQAEEMVEKHGGKNISAVSKNLNYLIVGEKAGSKLKKAQDIGTITILDEQ
QFLDLVNS
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaaaatattcaacaaaagatagaagagctaagagaagagcttcatcagcataat
tacaattactatattctggatgaaccttctatctcggattttgaatttgatgcaaaactg
aaggaacttcaggatctggaaactcagcatccggaattcaatgatcctaactcacctact
ttacgagttggcggcggggttaccaaaaactttcccactgtacaacaccagttcagaatg
tactctctggataattcttatgacttcaatgatctggaagattgggaaaaacggataata
aaaaccattgacgagcctgtagagtttgttgcagaactaaaatatgatggtgcttctatt
tccattctatatgaaaacggaaaacttattcaggcagtaacccgtggagatggattccag
ggtgatgaaattacaggtaatgtaagaactatttccgatgtcccgttgaaactgaaaggt
gaatttcctgaacgtttttatatgcgtggtgagatttatcttacccgtaaaaattttgat
aaacttaacgcacttcgtgaggaagagggacttgatccctttatgaatccacgaaataca
gccagcggaagtcttaaaatgcaggactccggtgaggtaagaaaacgtggactttctgca
gtattatatcaatatatcgcagagaattttcctgcggaaacccactgggatttattagcc
aatgcaaaacagtgggggttcagagtttctgaagatcaggcaaaattatgcagaactttg
gacgacgtaaagaatttcatcaattactgggatcaggaaaggcataacctgccttttgag
attgatggtattgtaataaaggtaaactctctaaaacaccagcgtgaattgggctatact
gccaaatcaccacgttgggctatggcctataaatttaaggctgagaaagtagaaactgag
cttctgagcgtttcttatcaggttggaagaactggtgctattactcctgtagccaatctt
cgtcctgttttattagccggaacaactgtaaaacgtgcatcactgcataatgaggatatt
atcaaaaaattagatcttcatgagaacgattttgtttatgtagaaaaaggtggtgaaatc
attcctaaaattgtaggcgtcaatactgaaaaaagaacatctgaaagtaaagaaatagaa
tatataaagcattgtccggaatgtgggaccgagcttgtaaaaatagaagatcaggcgata
catttctgtcctaacgaactgcattgcccgccacaggtagttggcagaatgatccactat
gtttcccgtaaagcattaaatatagaaaatctgggaggtgaaactatcgaacaactttac
cgtgaaaagctaattgaaaatccagccgatctttataccctaaccaaagaacaattgctt
ccgctagagcgtatggctgaaaaatctgcacaaaatattctggatggtgtggaaaaatca
aaagaaataccttttgaaaaagtattgtacggaataggcatcaagcatgtaggggaaaca
gttgctaaaaaactggttaaaaacttcccaagcatagaggaattaaagaatgcaacagaa
gaagagctttgccaggtagaagatatcggtgcaaaaatagctgtaagtattaccgaattt
tttgcgaatcaggaaaaccttttgatgatagaacgtctgaaaaattatggtgtacaactg
gaaaagggggaaaacaccaatgacgtaatcagtaatgttctggacggaaagacgtttctt
ttcactgggaaattatctcttttcaccagagagcaggctgaagaaatggtagaaaaacat
ggtggcaaaaatatttctgctgtgtctaaaaacctaaactatctgattgttggagaaaaa
gccggaagcaaactgaaaaaagctcaggatatcggaactattaccattctggatgaacag
caatttttggatcttgtcaatagctaa
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