Escherichia marmotae: C1192_17400
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Entry
C1192_17400 CDS
T05353
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ema
Escherichia marmotae
Pathway
ema03030
DNA replication
ema03410
Base excision repair
ema03420
Nucleotide excision repair
ema03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ema00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C1192_17400
03410 Base excision repair
C1192_17400
03420 Nucleotide excision repair
C1192_17400
03430 Mismatch repair
C1192_17400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ema03032
]
C1192_17400
03400 DNA repair and recombination proteins [BR:
ema03400
]
C1192_17400
Enzymes [BR:
ema01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
C1192_17400
DNA replication proteins [BR:
ema03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
C1192_17400
DNA repair and recombination proteins [BR:
ema03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
C1192_17400
NER (nucleotide excision repair)
GGR (global genome repair) factors
C1192_17400
MMR (mismatch excision repair)
DNA ligase
C1192_17400
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C1192_17400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AUT28690
UniProt:
A0A7H9K8E0
LinkDB
All DBs
Position
3368054..3369739
Genome browser
AA seq
561 aa
AA seq
DB search
MKVWIAVLMSVLCWQSSAQGVCPVWSPARAHEEISRLQQQIKQWDEDYWKKGKSAVEDGV
YDQLSARLAQWQRCFGEEATREAMILPLIGTVMHPVAHTGVRKLADKNALSLWMRERSDL
WVQPKVDGVAVTLVYRDGKLIKAISRGNGLKGEDWTQKVRSIPSVPQSVSEPLANSTLQG
EIFLRSEGHIQQQMGGMNARAKVAGMLMRQDNNDTLNSLGVFIWAWPDGPQLMAERLQQL
ASAGFSLTQAYTHTVKNADEVERARNEWWKAKLPFVTDGVVVRAAKEPESRHWLPGQADW
LVAWKYQPVAQVAEVSSIQFAVGKSGKISVVASLAPVMLDDKKVQRVNIGSVRRWQEWDI
APGDQILISLAGQGIPRIDDVVWRTAERRKPTPPENRFNSLTCYFASDVCLEQFISRLVW
LGSKQVLGLDGIGEAGWRALHQTHRFEHIFSWLSLTPEQLQNTPGIAKSKSGQLWHQFNL
ARKQPFTRWVMAMGIPLTRGALNAGDERSWTQLLQRSEQHWQHLPGTGSRRASQIIEWKN
NVQIKTLGSWLATQQIAGFVP
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtatggattgcagtgttaatgagtgttttatgctggcaatcatcggcgcaggga
gtctgcccagtctggtcgccagccagagcgcatgaagaaatttcccgcctgcaacagcaa
ataaaacagtgggatgaggattactggaaaaagggaaaaagtgctgttgaagacggcgtt
tatgatcaactcagcgcccgccttgcacagtggcaacgttgttttggtgaagaggcaact
cgtgaagccatgatactgcctttaattggaaccgtaatgcatccagttgctcatactgga
gtgcgtaagctggcggataaaaatgcattgagcctttggatgcgtgaacgcagcgatctt
tgggtgcagccaaaagttgatggtgtcgcggtaactctggtctatcgtgacggaaaactg
attaaggcgatcagccgtggcaatggcctgaaaggtgaagactggacgcagaaagtgcgc
tcgattccttctgtaccgcaatccgtcagcgaacctttagccaatagcacactgcaagga
gaaatatttctccggagcgaaggtcatatccagcagcaaatgggcggaatgaatgcgcgt
gcaaaagttgcaggtatgttgatgcgccaggacaataacgacacgctaaattcgctgggc
gtttttatctgggcgtggccggatggaccgcagttaatggccgagcgattgcagcagctt
gcaagcgcgggatttagtctgacgcaagcgtacactcacacggtgaaaaatgctgatgag
gttgagcgagcacgtaatgagtggtggaaagcgaaattgcccttcgtcaccgatggcgtg
gttgtgcgagcggctaaggaacccgaatcccgccattggttaccggggcaggcggactgg
ctggtggcgtggaaatatcaacctgtggcacaggttgctgaagtgagttcgattcagttt
gcagtgggcaaaagcggaaaaatatcggtggtggcgtcactcgcaccagtcatgctggat
gataaaaaagttcagcgggtgaatattggttccgtcagacgctggcaggagtgggacata
gcgcctggcgatcaaatcctcataagtcttgccggtcagggtattccacgtattgatgat
gtggtgtggcggactgcggaacgcagaaagccgacaccgccagaaaaccgctttaactcg
ttgacctgttactttgcttctgatgtttgtctggagcaattcatatcacgcttagtctgg
ttggggtcaaaacaggttttggggctggatggcattggcgaagctggctggcgcgcactg
catcagacgcatcgctttgagcatatcttttcctggctttcattaacgccagagcaatta
cagaacacgccagggatagcgaaaagtaaaagcgggcagttatggcatcagtttaatctg
gctcgtaagcagccttttacccgctgggtgatggcaatgggaataccgttaacccggggg
gcgcttaatgccggtgatgaacggtcctggacgcaacttttgcagagaagtgaacaacat
tggcagcatctgccgggaaccggatctcgtcgcgccagccagattattgaatggaagaat
aatgtgcaaatcaagacgctaggtagctggttggctacccagcagatcgcaggttttgta
ccttaa
Escherichia marmotae: C1192_23400
Help
Entry
C1192_23400 CDS
T05353
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ema
Escherichia marmotae
Pathway
ema03030
DNA replication
ema03410
Base excision repair
ema03420
Nucleotide excision repair
ema03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ema00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C1192_23400 (ligA)
03410 Base excision repair
C1192_23400 (ligA)
03420 Nucleotide excision repair
C1192_23400 (ligA)
03430 Mismatch repair
C1192_23400 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ema03032
]
C1192_23400 (ligA)
03400 DNA repair and recombination proteins [BR:
ema03400
]
C1192_23400 (ligA)
Enzymes [BR:
ema01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
C1192_23400 (ligA)
DNA replication proteins [BR:
ema03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
C1192_23400 (ligA)
DNA repair and recombination proteins [BR:
ema03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
C1192_23400 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C1192_23400 (ligA)
MMR (mismatch excision repair)
DNA ligase
C1192_23400 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C1192_23400 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
RNA_ligase
DZR_2
Prok-E2_C
Zn-ribbon_8
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
AUT29729
LinkDB
All DBs
Position
4602957..4604972
Genome browser
AA seq
671 aa
AA seq
DB search
MESIEQQLTELRTVLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAKHPELITPDSPTQ
RVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLA
VSILYENGVLVSAATRGDGTTGEDIASNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAG
FEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHL
GRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEG
EAVARCTGGLICAAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAG
KLTGLERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATASGLAAYFGTLEALEA
ASIEELQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAG
KTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVI
DEAEMLRLLGN
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaatcgaacaacaactgacagaactgcgaacggtgcttcgtcatcatgaatat
ctttatcatgtgatggatgcgccggaaattcctgacgctgaatacgatcgcctgatgcgc
gaactgcgcgagctggaagccaaacatccagaactgattacccctgattcacccactcaa
cgtgtaggtgcagcaccgttagcggctttcagccagatccgtcatgaagtaccgatgctg
tcgctggataacgtttttgatgaagagagttttcttgctttcaacaaacgcgttcaggat
cgtctgaaaagtaacgaaaaagtgacctggtgctgtgagctgaagctcgatggccttgcc
gtcagcattctgtatgagaatggcgtactggtgagcgcagcaacccgtggcgatggcact
accggggaagacatcgcatctaacgtccgtactattcgcgccattccgctgaaactacac
ggtgagaatatcccggcgcgtctggaagtgcgtggtgaagtgttcctgccgcaggcgggc
ttcgaaaagatcaacgaagatgcgcgacgcacgggcggaaaagtgtttgctaacccacgt
aatgcggcggcaggttcattgcgtcagcttgatccgcgtatcacagccaagcggccgctc
actttcttctgctacggcgttggcgtgctggaaggcggtgagctgccagatactcatctt
ggtcgtttactgcaatttaaaaagtggggattaccggtcagcgatcgcgtcacgttatgc
gaatcggcggaagaggtgctggcgttctaccataaagtagaagaagaccgcccgacgctg
ggctttgatatcgacggcgtggtaattaaggtcaactccctggcgcagcaggaacagctt
ggctttgttgcgcgcgcccctcgttgggcagtggcgtttaaatttccggcacaggagcag
atgacttttgtgcgtgacgtcgagtttcaggttgggcgtactggcgcgattacgcctgtt
gcacgtctcgaacctgtccatgtcgcgggtgtgttggtgagcaacgccaccctacacaat
gccgatgaaatcgaacgtcttggcttacgtattggcgataaagtggtgattcgccgtgct
ggcgacgtgatcccgcaagtggttaacgtggtgctttctgaacgcccggaagatactcgt
gaggtagtattcccgacgcattgcccggtatgcggttctgacgtggaacgagtggaaggc
gaggctgtggctcgctgtactggtggtttgatttgcgccgcccagcgtaaagagtcgctg
aaacactttgtttcccgtcgcgcgatggacgttgacggtatgggagacaaaatcatcgac
cagttggttgaaaaagaatatgtccatacgcctgcggatctgttcaagttaacggcgggt
aagctcaccgggctggagagaatggggccgaaatcggcgcaaaacgtggttaacgcactg
gaaaaagcgaaagaaaccacctttgcccgcttcctttatgcgcttggcatccgcgaagtc
ggtgaggcaacggcatcaggtctggcggcatatttcggcacgctggaagcgctggaagcg
gcttcgattgaagagctgcaaaaagtgcccgatgttggaattgtcgtcgcatctcatgtg
cacaacttctttgccgaagaaagtaaccgtaatgtcatcagtgaactgctggcggaaggc
gttcactggcctgcgccggtagtcatcaacgcggaagagatcgacagcccgtttgctggt
aaaacggtggtgctcacgggtagcttaagtcagatgtcgcgtgatgacgctaaagctcgc
ctggtcgaactgggcgcgaaagtggcgggcagcgtgtcgaagaaaaccgacctggtgatt
gccggagaagccgcaggttctaaactggcgaaagcgcaggaactgggcattgaagtgatc
gacgaagctgaaatgctgcgtttgttgggcaactga
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integrated database retrieval system
