Eleginops maclovinus (Patagonian blennie): 134860974
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Entry
134860974 CDS
T09869
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
emac
Eleginops maclovinus (Patagonian blennie)
Pathway
emac03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
emac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
134860974 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
emac03400
]
134860974 (lig4)
Enzymes [BR:
emac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
134860974 (lig4)
DNA repair and recombination proteins [BR:
emac03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
134860974 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT_2
BRCT
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
ATG17_like
AvrB_AvrC
Motif
Other DBs
NCBI-GeneID:
134860974
NCBI-ProteinID:
XP_063733985
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All DBs
Position
24:4590190..4594785
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AA seq
910 aa
AA seq
DB search
MEGSSKSDAAGQPSVAAQVPFLHLCSTLEKIQKSKLRPDKSKTLRDFIESWRNFHSALHK
DNPKTTDSFYSAMRLIVPSFERERMAYGIKESMLAKLYIDVLGLPKNGPEANKLLNYRAP
TTSQGEAGDFAGMAYFVLKKRCTSQGNLSIKEVNDFLDLVAINNASRQKDLVKKSLLHLI
TQSMALEQKWLIRMILKDMKLGISKETVLQVFHPDASELYNVNTDLNKVCQQLHDPSTSL
SDVSIGLFSAFKPMLAAVANIRNVEKQMGNSPFYIQTKLDGERIQLHKDGDVYKYFSRNA
FEYTQQFGASPLEGSLTPYIHNIFKSHVVNCILDGEMMAYNPTTEAFMQKGSKFDIKKLM
EDSQLQTCFCVFDVLLVNDQKFGKETLKKRLETLQTVFTPVKGRIHLIPKADARTVQDVV
NALNDAIDTREEGIMVKDPLSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKGK
RGGMMSHFLAAIAEAPKPGEKPLVFHSFCRIGSGYTMKELYDLGLKLAKHWKVYRKNDPP
ASILCGTEKPEVYIEPCNSVIIQVRASEIVGSDMYKTNCTLRFPRIEKIREDKEWHQCMT
LAELDQFRGKASGKLASRHLHIDGDEPQKKKRKVPVKPKKVVGIIDHFKHQDLSGVTKET
DMFEDVEFCILNGTEQHPKAELEKGVARCGGIVVQNPGRDTYCVIAGVENMRVKNLVLSD
QHDVVWAAWLLECLDQKEVVPWQPRHMIHMSPSTREHFAKEYDSYGDSYFVDTDEQQLRE
VFGRISSEDTSAAMDISQVEQRYSWEDVPTSMFRPFEVYMDRFADIGDRETAIPASCLDI
RALEFRYHGGKVVQKLEEGVSHVIISEETRLLHLRTLRRSFRKKFKIVRESWVTDSIKAG
YVMNDTDYLA
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atggagggatcttccaaaagtgatgcagccggtcagccctctgttgctgctcaggttcct
ttccttcatctttgctccaccttagagaaaatccagaagtctaaactccgtccagataaa
tccaagacccttagggatttcattgagtcatggaggaattttcattctgccctccacaaa
gacaaccccaaaacaacagactctttctactcagctatgcgcctcatagtcccttctttt
gaacgagagcgcatggcttacggcatcaaagagagcatgttagctaaactctacatcgat
gtcttaggtctcccaaagaatggcccagaagccaataaacttttgaactaccgtgctccg
actacatcccaaggtgaagctggagactttgccggcatggcgtactttgttctgaagaaa
cgctgcaccagccaagggaatctcagcatcaaagaagtaaacgactttctggatttggta
gctatcaacaacgctagcaggcagaaggatcttgtgaagaagagtctgctgcacctcatc
acccagagcatggctctcgagcaaaagtggctcatcagaatgattctgaaagacatgaag
ctcgggatcagcaaagaaactgttcttcaagtcttccacccggatgccagcgagctctat
aatgtcaacaccgacttaaacaaagtctgccagcagctccacgacccctccacgtcttta
agcgatgtctctatcggactcttctctgctttcaagcctatgttggcagctgtggcgaac
atccgcaatgtggagaaacagatgggaaacagccctttttacattcagaccaaactggac
ggagagcgtatacagcttcacaaagacggggacgtgtacaagtactttagtcgaaacgct
tttgagtacacccagcagtttggagcatcaccactggaaggctcgctgacaccttacatc
cacaacatttttaaaagccacgttgtaaactgcatccttgacggggagatgatggcgtat
aacccgaccacggaggccttcatgcagaaagggagcaaattcgacatcaagaagctcatg
gaggactctcagctacagacttgcttctgtgtgtttgacgttctgttagtcaacgaccag
aagtttggcaaggaaacactaaagaagcgcctcgagaccctgcaaaccgttttcactcca
gtcaagggcaggatacatctgataccaaaggccgatgccagaaccgtgcaggacgtggtg
aacgccctcaatgacgccattgacactagagaagaggggatcatggtgaaggaccctttg
tctatctacaaacctgacaagcgaggagagggatggctgaaaataaagccggaatatgtg
gatggcttgatggatgagcttgacctgctgattgttggcggctactgggggaaaggcaag
cgtggcggtatgatgtcccatttcttagctgccatcgcagaagctccaaagcctggcgag
aaacccttagttttccactctttctgccgcatcggctcgggctacaccatgaaggagttg
tacgacctcggtttaaagctggccaagcattggaaagtctatcggaaaaacgacccgcca
gcatccatcctgtgcggaaccgagaaaccagaagtctacatcgaaccctgcaactcggtc
atcatccaggtgagagcgtctgaaatagtcggaagcgacatgtataaaaccaactgcacc
ctgcgcttccctaggatcgagaagatccgcgaggacaaggagtggcaccagtgcatgaca
ctcgcagagctggaccagtttcgcgggaaggcctctgggaaactagcctcgcggcacctc
cacatcgatggcgacgaaccgcagaagaagaagcgcaaggtgccggtcaaacccaaaaag
gtggtcgggatcatagaccacttcaagcaccaggacctctccggggttaccaaggagacg
gatatgtttgaggatgtcgagttctgtatcctaaatggcactgagcagcaccccaaagcg
gagctggaaaagggcgtggccaggtgtggtggtatcgttgttcaaaacccaggaagggac
acctactgcgtgattgccggcgtggagaacatgcgcgtgaagaacctggtgttgtccgac
cagcatgacgttgtgtgggccgcctggctgctggagtgcctggaccagaaggaagtggtc
ccatggcaaccacgtcacatgatccacatgtcgccctccaccagggagcacttcgccaag
gagtacgacagctacggcgacagctacttcgtggacacggacgagcagcagctgcgggag
gtgttcggacgaatcagcagcgaggacacgtcagcggcgatggacatcagccaggtggag
cagcgctacagctgggaggacgttcccacgagcatgttcagaccatttgaggtctacatg
gacaggttcgccgacattggagaccgtgaaaccgccatacccgcttcctgtttggacatc
agggcgctggagtttcgctaccacggaggtaaggtggtgcagaagttggaggaaggagtc
tctcatgtcattatctcagaggaaaccagacttctgcatttaaggactctgaggcgcagc
tttaggaagaagtttaagatcgtaagagaatcatgggtgactgattcaataaaagcaggg
tacgtgatgaatgacactgactacttagcttaa
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