Eleginops maclovinus (Patagonian blennie): 134884087
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Entry
134884087 CDS
T09869
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
emac
Eleginops maclovinus (Patagonian blennie)
Brite
KEGG Orthology (KO) [BR:
emac00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
emac03036
]
134884087 (smchd1)
03400 DNA repair and recombination proteins [BR:
emac03400
]
134884087 (smchd1)
Chromosome and associated proteins [BR:
emac03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
134884087 (smchd1)
DNA repair and recombination proteins [BR:
emac03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
134884087 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
HATPase_c_3
SMC_hinge
HATPase_c
Glyco_hydro2_C5
HEPN_Apea
Psb28
DUF237
Motif
Other DBs
NCBI-GeneID:
134884087
NCBI-ProteinID:
XP_063768797
LinkDB
All DBs
Position
21:5293939..5311526
Genome browser
AA seq
1957 aa
AA seq
DB search
MEGGKARRRICVYDCRSEDGRKVTKKKLETRDVDFRGFLQLLHKEFAIRSNETFVLVTTD
RVVLDFKIFEELQDDSTLLLLEQEHQALASATKERINFTPHYDTLIQSGTYEYWASRGQK
PLPYSLAELIDNALSATAKNKGMRTIEIRMMFDETLGKPAVIVLDNGCGMTSQQLKNWAR
YRLSKFNRENGSSGSEREGYVRPDPVPRSLNSDISYFGVGGKQAIFHIGDSGRMITKAYG
SPDVHEMLISKKDFESKEKNKEDVFSGNILNRNPCNSSHLNERFLRDLIAEESGKKKFTA
VVITGVFPDHIAFIKQDYKVWTKQLAQIYHYYIHGATGRDMSDRSTDSNSHPEIKITITL
RDKPPLVIDLREVENDMQTQYIQSAVDTFEFKATTSEGGTVEGLIRYHPFLYDKETYPEE
PDAGQEEDDADNEPGAQHQKIRKRPIFDCFWNGRLIPYTTVSEFDWCDQSKGAKELAECY
NRISGVLFTDDKFPVSTNKLTFMELELKLKQKDTFFTRIVNGQKQRGPIQKEFTQWLKNC
HEKYDKQVKFLDFKETITRTDVSVKKMQYPWAAFTSIEWDGKKYSEGQLVKSQKTQPIIY
GSVVRFLLYGQHEGNVFATGGQVEICQEPKAFHNKNKTMLISKIDKTATDEAIQKNIDND
AAKLPEILRVNWPEGNPWPQNGVQPAGAQLGPLNVEILNKKGEFISKMPAVGQGAGKRLN
IELKIVKHGPKGDTEVFQCTALTAKFFWFKKIDNLTSLGEYTLILRTLLNENNANSFGGR
ELPSYKLNFTIKEGKAESFVFGKMNSSLRVGMPFDIPLQIKDGYDHSAVPPPDLKPLLKC
SGLTISYDTTESSGSKFTFKGVKASGKSLNHQQSKTYDLKVTLVGLTQNTDTIKIILLPG
IPHSIHVTPENNPIRIENGDPVLFNVEIHDEAGNLTANAKQIVRCQIHGCPPYATDCSNT
GAGQIVTKPINLKITKGEPKKLKVQFEMHSQKKIAAVVRELVVVPGRRISHMEICSQDDE
NLVLTNNEKIVWLAGGLMENLFYKLYDEAGREVAPTPEIASKIKVNWTGDVHLEDLVQGK
LPDLQVPKQVQKEHFFQVSYQDQSVFVSFHIVPQPDEPKRLKATLVKSTVKLGEVIPGNI
SLELVDQYDNVTKALTSDSKNHMTVKAEGLEESAITFKWQEGSSSVLVMGVQLKSGALGP
REICFTYKNYEERVIVKVTAGVPAKLKLLSEPVKSLQLMNDQGIETPFVVQLCDEGDNPC
SDQRVVVELRSSPQLLKLNLSVTSQPVNVEGKASFTVHSVSGPKGYYQLVFKGSLNNKPI
PGPSVNVTVNPDPSKPVSLSVVYDLKKFPAGGVFPVFSVTVVSEEGSPMTTFNPAAASMR
LWKGLPSDKTPSETATELKCSKPMKNQKNDRFYFSDKEIPEDVGKHTIQFSVRLEATKFL
YSEQIIIDVVANQPVKLGADSQPPTPVVSYSKVLANRTLVENMTLRIMDSFGNPAGEHLN
GNVVISIKNCSGDSNGTPPLFEGSTKSLEISLKEGQAHIDRLAIMENSPGENGSAYTLLF
TPEVLQFPTLAPFELPFHFYNDVDNQRKMSELSKKKDELAVAVRNDKEFISTFKDLLKLM
TSHHLAASNKEAAIRNVLHTKNMETAQTIPDLDRLINEKRAEIERITTIPRRIFSPPDHF
RRQQDVLGMVGHLAFVQDDDAARVISWAIQGDMECIITKTTAAARRIYDDTNGQQQVMAL
DSVYVHPGNRTMPHLRNGCPLFCPPGNPVLARELLLYADNPESCEMVFKNILAETILIDD
LDSANSYRKMVVQNKMQCPTILTREGDRVSAKGKFGGRQNKAPPISALKVFGAPFPQHYF
LLKEHIDLLTDHRSALDKMNQAAEKRDNHLNNMKSPEMRKRDQEMEGRKKQLEEIERQLV
STPARPLKRALENTGESSGINPKRLSRDPRMRSTHST
NT seq
5874 nt
NT seq
+upstream
nt +downstream
nt
atggaaggaggaaaagcccgcaggaggatttgtgtttacgactgccgctccgaagatggg
aggaaagttaccaagaaaaagctggaaacgagggatgtggacttcagaggctttcttcaa
cttttgcacaaggaatttgcaatccgttcaaatgaaacatttgtgttggtcacaacagac
agagtagtcttggattttaaaatatttgaggagcttcaggatgacagcaccctcctcttg
ttggaacaggagcaccaagctctggcctcagcgacgaaggagcgcatcaactttacgcct
cattatgatacgctgatccagagtggcacatatgagtactgggctagcaggggacagaaa
ccattgccatactctcttgccgagctgatcgacaacgctctttcagccacagctaaaaac
aaaggaatgaggacgatagagatacgcatgatgtttgatgaaactctcgggaaacctgca
gtgatcgttttagataacgggtgtggaatgacctctcaacagctcaaaaactgggcacgg
tacagactctccaagtttaacagggaaaacggctcgagtggaagtgagcgtgaagggtat
gttcggcctgatcctgtccctcgcagtctcaacagtgatatatcttattttggagttgga
ggaaaacaggctattttccacatcggagactcaggcaggatgatcactaaagcatatggc
tccccggatgttcatgagatgcttatttccaaaaaagactttgagagtaaggagaagaac
aaagaggatgttttcagcgggaacattctcaacaggaatccctgcaactcttcacattta
aatgagcgcttcctccgtgacctcatcgcagaggaatctggcaagaaaaagttcacggcc
gttgtcattacgggagtctttcctgatcacatcgcttttatcaaacaggattacaaagtg
tggaccaaacaacttgctcaaatatatcactactacattcatggagccactggaagggac
atgagtgacaggtccacagactcgaatagtcaccctgaaattaaaatcacgatcactttg
cgtgacaagcctccccttgtgatagatctaagagaagtggaaaacgacatgcagactcag
tacatacaatcggctgtggacacgtttgagtttaaggccaccacttcagaaggcggcaca
gtggagggcctcattcggtatcatcccttcctgtatgacaaggagacttacccggaggaa
cctgacgctgggcaagaggaagatgatgctgataatgagccgggagcccagcatcagaaa
ataaggaaaaggccgatattcgactgtttctggaacggacggctcataccttacaccaca
gtgtctgagttcgactggtgtgatcagagtaaaggagcaaaggagcttgcagagtgttac
aatcggatttcaggggtgctcttcaccgacgacaaattcccagtcagcaccaacaagctc
accttcatggaactggagctgaaactgaagcaaaaggacactttcttcacacgcattgtt
aacggacagaaacaaagaggtcccattcagaaggagttcacgcagtggctaaagaactgt
cacgagaagtacgacaagcaagtgaagttcctcgacttcaaggagaccatcacacgaaca
gatgtgtctgtcaagaaaatgcagtatccctgggcggcgttcacctccatcgaatgggac
ggcaaaaaatactcagaaggccaacttgtgaagtctcagaaaacacagcccattatctat
ggcagcgtggtgcgtttcttgctgtatggacaacatgaaggaaatgtctttgccacaggg
ggacaggtggaaatttgtcaagaacccaaagcctttcacaacaagaacaagaccatgctc
atttccaagattgacaagaccgccactgacgaagccatccagaaaaacattgacaacgac
gcagccaagcttccagagattctgagagtgaactggcctgaagggaacccctggccacag
aatggcgttcagccagctggggctcagttagggccactcaacgtggaaattctgaacaag
aaaggagagtttatatccaagatgccagcagtgggccagggagccgggaaaagactcaat
attgagctcaaaattgttaagcacggtcctaaaggagatacagaagtcttccagtgtact
gccctaacagcaaagtttttctggttcaaaaagattgacaatctgaccagcctgggggag
tatactctgatcctcaggactctcttgaacgagaacaatgctaacagctttgggggcaga
gagcttccgagctacaaactcaacttcaccatcaaagagggaaaggcggagagttttgtt
tttggtaaaatgaactccagtcttcgtgtgggaatgcccttcgacattcctctgcagata
aaagatggttatgaccactcagcagtacctcctcctgatctcaaacctttactcaaatgc
agtggcctgactatcagttacgacacaacggagagcagtggttcgaagttcaccttcaaa
ggtgtcaaagcaagtggaaaaagcctgaaccaccaacaatcaaagacatatgatctgaaa
gtgaccctggtgggcctgacgcaaaacacagacactatcaagatcattcttcttcctggg
attccacactccatccacgtgacaccagaaaacaacccaatcagaatagagaatggagac
ccagtgttgtttaatgttgagatccacgatgaggcgggaaacctcacagctaacgccaaa
cagatcgttcgatgccagattcatgggtgtccgccatatgctactgactgcagtaacaca
ggagccggacagatcgtgacaaagcccataaacctgaaaataaccaagggagaaccaaaa
aaactcaaggttcaatttgagatgcatagtcagaagaaaatcgcggcagtcgttagggag
ctggtggtggtgccgggcagaagaatctcccacatggagatctgcagccaggatgatgaa
aatctggtactcacgaacaacgaaaagatagtatggctggctggaggcctgatggaaaac
ctgttctacaaactgtacgatgaggctggtagagaggtcgcccccacgcctgaaatagcc
tccaagataaaggttaactggacaggagatgtacatctggaagatttggtccaggggaag
ctgccggacctacaggtgcccaagcaggtgcagaaagagcacttcttccaggtgtcctac
caagaccagagtgtgttcgtgtccttccacatagtaccacaacctgatgaaccaaaacgg
ctgaaagctactctagtcaagagcacagttaagctgggggaagtaatacccggaaacatc
agcttggagcttgtggaccaatatgataatgtaaccaaggcgcttacctctgactcgaag
aaccacatgacggtgaaagctgagggtctggaagagtcagccatcactttcaaatggcag
gagggcagcagttctgttctggtgatgggggtgcagctcaagtcgggggctcttggtccc
agagagatctgcttcacctacaagaactatgaggagcgcgtcatagttaaagtgaccgct
ggagtccctgcaaagcttaaactactcagcgagccagtgaagtctttgcagcttatgaat
gaccaaggcatcgagacaccatttgttgtccagctgtgcgacgagggggataacccctgt
tcggaccagagggttgtggttgaattgaggtcgtcaccacagttactgaagttgaattta
tctgttacttcacaacccgtgaacgtagaagggaaagcctctttcactgttcatagcgtg
agcggaccaaaggggtactatcagctggttttcaaagggtccctcaacaacaaacccata
cctggtccctcagtgaatgtcaccgtcaatcctgatcccagcaaacctgtgagcctgtcc
gtggtgtacgaccttaaaaagttccctgctggaggcgtcttcccagtcttctctgtgacc
gtggtgtccgaggaaggaagccccatgactactttcaatcccgccgctgcctccatgcgg
ctgtggaagggattgccatcagataaaactccatcagaaacggccactgagctgaaatgt
agtaaacccatgaagaaccagaagaacgaccgtttctacttcagcgataaagagatccca
gaagatgttggaaaacacacgatccagttttctgtacgactagaagcaacaaagttcctg
tacagtgaacagattattatagatgtggtggccaatcaacctgtcaaactgggagccgac
tctcagccacccaccccagttgtttcctacagtaaggtactggccaaccgaaccttggtg
gagaatatgactctgaggataatggattcttttggaaacccagcgggggaacaccttaac
gggaatgtggtcatttctataaagaactgtagcggagacagcaacggaaccccccctctg
tttgaaggctcaaccaaaagtttggaaattagcttgaaagaaggacaggcccatatcgat
aggctggctatcatggagaacagccccggggaaaatggaagtgcatacaccctactcttc
acaccagaagtgttgcagtttcccaccctggccccctttgagctgccattccacttttac
aatgatgtagacaaccaacggaaaatgtctgagctgtccaagaagaaagatgagctcgct
gttgctgttcgtaacgataaggagttcatttccacttttaaggatctccttaagttgatg
acctctcatcacctcgctgcgagtaacaaagaggctgcaattagaaatgtgctgcacacg
aagaacatggaaacagcacaaactattccagatttggacagactcataaatgagaagcgg
gcagaaattgaaaggataacgacaatacccagaagaattttctccccccccgatcacttc
aggaggcagcaggatgttttgggaatggttggccatctggcctttgtgcaggatgatgat
gctgcgcgggttatctcctgggcaatccagggtgacatggagtgtatcatcaccaaaaca
accgcagcagcgaggaggatctacgacgacaccaatggccagcagcaggtcatggccctc
gacagtgtttatgtgcaccctggcaacagaacgatgccgcacttaaggaatggctgccct
ctcttttgtcctcctggaaacccggtcctcgccagagaattgctgctgtacgccgacaac
cctgagagctgtgaaatggtttttaaaaacatcctcgcagaaacaattctgattgatgac
ctggactctgcaaacagctacagaaagatggtggtgcagaataagatgcagtgtcccacc
atcctgaccagggagggggacagggtcagcgccaagggcaagtttggaggcagacagaac
aaagccccaccaatcagcgcgttaaaagtgtttggggcccccttcccacagcattacttt
ttacttaaggaacacatagacctgctcactgaccaccgctcagctctggataagatgaac
caagcagcggagaagcgtgacaatcacttaaataacatgaagtctcctgaaatgaggaaa
agggaccaggaaatggaggggagaaagaaacagctggaagagatcgagagacagctcgtg
tcgaccccagcaagaccgttgaaacgggctctcgagaacactggagagtcgtccggcatc
aatcccaagagattaagcagagatccacgcatgagatccacacactcaacctga
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