Echinicola marina: KZP23_21155
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Entry
KZP23_21155 CDS
T08295
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
emai
Echinicola marina
Pathway
emai03030
DNA replication
emai03410
Base excision repair
emai03420
Nucleotide excision repair
emai03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
emai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KZP23_21155 (ligA)
03410 Base excision repair
KZP23_21155 (ligA)
03420 Nucleotide excision repair
KZP23_21155 (ligA)
03430 Mismatch repair
KZP23_21155 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
emai03032
]
KZP23_21155 (ligA)
03400 DNA repair and recombination proteins [BR:
emai03400
]
KZP23_21155 (ligA)
Enzymes [BR:
emai01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KZP23_21155 (ligA)
DNA replication proteins [BR:
emai03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KZP23_21155 (ligA)
DNA repair and recombination proteins [BR:
emai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KZP23_21155 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KZP23_21155 (ligA)
MMR (mismatch excision repair)
DNA ligase
KZP23_21155 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KZP23_21155 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
Nlig-Ia
PTCB-BRCT
Terminase_6C
5_3_exonuc
Auto_anti-p27
UPF0758_N
Motif
Other DBs
NCBI-ProteinID:
UCS93136
LinkDB
All DBs
Position
5210905..5213367
Genome browser
AA seq
820 aa
AA seq
DB search
MNTIPKSEAKKRIAELTTAINHHNQLYYQEDRTEISDYEFDQLLNELIVLENQYPELQDK
NSPSLRVGGTITKEFETVDHETRMLSLGNTYSKEDLEAFDERVIKGLGHKQYSYFCELKF
DGVAISLVYEQGKLVRAVTRGDGYRGDNVTENVKTIQSIPLFLEGDDIPSKFEVRGEIFL
GIKEFEKINTERAANDEALLANPRNTASGTLKMQDSSVVAKRRLNCYCYQLLGDDLEVEN
HFDAIKLLEKWGFNISPTYKNCTDINSVLDYIESWREKRHELPLETDGVVLKINDYGQRE
ELGYTAKIPRWAIAYKYKAESAESELMSVTYQVGRTGAITPVANLSPVSLARTTVKRASL
HNANEIERLGLHNGDTVLVEKGGEIIPKITGIVLEKRKTGTQPVQYITHCPECGTLLERK
EGEAKHFCPNANSCPPQILGRIEHFVSKRAMDIDSLGTERIRALINQGYVANPADLYELH
DQREMLLGLEINNDQYDKSSEGYLYVILKKALFSITHGISLTAIDQFLQDNETLELQPKL
EKFKSFIEIQKSGKAQNLGSLEILLERLADLPHDQIEDFLPCSVVLSLFVGKQISLEKLH
QLSQEKNTVHDIVLAFDFELSTEQEEKIKKLKGNTFQEGVISNMFHGIESSKNQPFEKVL
FALGIRNIGENTAQILAHHFGNIDQLMQSSPENLLEINGIGETLVYSLKEFFKQEENLNI
IKRLRAQGLHFEIKEEDMPSKKSNVLEGKKILASGKLEYFKRDEIIDTVTAHGGTYVKSV
SKSLDFIIEGADMGPSKKEKAEKLGVKLISEEEFIQMIQD
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atgaacaccattcccaaatccgaagcaaaaaaaaggattgcagaactcactactgctatc
aatcaccataaccagctctattatcaggaagaccgtacagagatttctgattatgaattt
gaccaacttttaaatgagcttatcgttctagaaaatcaatatccagaattacaggataaa
aatagccctagcctgcgcgtaggtggcaccataaccaaagaattcgaaactgttgatcat
gaaacgagaatgctctctttgggaaacacctattccaaggaagatttagaagccttcgat
gaacgggtgatcaaaggcttgggccataagcagtattcctatttttgtgagctaaaattc
gatggagttgcaattagtcttgtctatgaacaagggaagctcgtaagggccgtcacccgc
ggagatggctatagaggtgataatgtcactgaaaatgtaaaaaccatccaaagtatcccc
ctatttcttgaaggtgatgatattccctccaaatttgaggtacggggcgaaatatttttg
ggcatcaaggaatttgaaaagatcaacactgaaagggctgccaatgatgaagccttattg
gccaatccaagaaacactgcttcagggacccttaaaatgcaagacagcagtgtagtagcc
aaaagaaggttaaactgctattgctaccagcttcttggggatgatcttgaggttgaaaat
cactttgatgctataaaattattggaaaaatggggatttaatatttcccctacttataaa
aactgcactgacatcaactcggtattagactatatcgaatcttggagggaaaaacgtcat
gaattacccttggaaacggatggtgtggtgctaaaaatcaacgactacgggcaaagagaa
gagctcggctatactgctaaaataccaaggtgggccattgcctacaaatataaagcagaa
agtgctgaaagtgaattgatgtcggtcacttatcaggtaggaagaacgggggccataacc
cctgtagctaacctttcccctgtttccttggctaggactacagtaaaaagagcctctcta
cataatgccaatgaaatagaacgtttaggtcttcataatggagatacagtactagtagaa
aaaggaggggaaatcatacctaaaataaccggaatagtcctagaaaagagaaaaacaggt
acccaacctgtccaatatatcacccattgtccagaatgcggaactttactggaaagaaaa
gagggtgaggccaagcacttctgtccaaatgccaattcatgccctccccaaatattggga
agaatagagcattttgtatccaaaagggcgatggatattgactcattgggaacagagagg
atcagggcattgatcaaccaaggttatgtcgcgaacccagcagatctttatgagctgcat
gaccaaagagaaatgctactgggcttggagatcaataatgatcaatatgacaagagcagt
gaaggatacctgtatgtgattctaaaaaaagcacttttttctatcacccatggcatttca
cttactgccatagatcaattccttcaagataatgagacactggaactacagccaaagcta
gaaaaattcaaaagctttattgaaatccaaaaatccggcaaagctcaaaatttgggatca
ttagaaattttgttagagcggctagctgacctccctcatgatcagattgaggactttttg
ccttgctcagtagtcctatctctttttgtgggcaaacaaatcagcttggaaaaactccat
caattatctcaagagaaaaacacggtacatgacatcgttttggcctttgattttgagcta
agtactgagcaagaagaaaaaatcaaaaagttaaagggcaatacattccaagaaggtgtc
atttcaaatatgtttcacggaatcgaatcctctaaaaatcagccttttgagaaagtactt
ttcgccttgggtatcagaaatataggagaaaacacagcacagatattggcccaccacttt
ggaaacattgaccagctcatgcagagctctcccgaaaacttattggagatcaatgggatt
ggggaaactttggtatatagtttaaaggaatttttcaagcaggaagaaaacctcaatatc
attaaaagactaagggcccaaggcttgcattttgagatcaaagaggaagatatgcccagt
aaaaagagtaatgtactggaaggaaagaaaattttggcttcgggaaaattggaatatttt
aaaagggatgaaataatcgataccgtgactgcacatggaggaacatatgtaaagtccgtt
tctaaaagtttggactttatcattgaaggagcagatatggggcctagtaaaaaagaaaaa
gctgaaaaattgggtgtaaaacttatttctgaagaggaatttattcaaatgatccaggat
taa
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