Eublepharis macularius (Leopard gecko): 129334781
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Entry
129334781 CDS
T09084
Symbol
RIGI
Name
(RefSeq) antiviral innate immune response receptor RIG-I
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
emc
Eublepharis macularius (Leopard gecko)
Pathway
emc04622
RIG-I-like receptor signaling pathway
emc04623
Cytosolic DNA-sensing pathway
emc05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
emc00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
129334781 (RIGI)
04623 Cytosolic DNA-sensing pathway
129334781 (RIGI)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
129334781 (RIGI)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
emc04054
]
129334781 (RIGI)
Enzymes [BR:
emc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129334781 (RIGI)
Pattern recognition receptors [BR:
emc04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
129334781 (RIGI)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARD_2
RIG-I_C
RIG-I_C-RD
DEAD
ResIII
Helicase_C
AAA_19
AAA_25
MIP-T3
Motif
Other DBs
NCBI-GeneID:
129334781
NCBI-ProteinID:
XP_054843073
UniProt:
A0AA97JQ03
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All DBs
Position
8:complement(121142803..121188518)
Genome browser
AA seq
930 aa
AA seq
DB search
MTQEQRENLFCFRSYIEKSLNPTYVLSYMKEWLSDEDVEKIQKEGDKEGPTAAATLFLQS
ILDLKEDGWFRGFLDALHSAGYSGLYKAIQSWDFQLIENLEEHRQLLKRIEPSLRDIDPV
QLLSYLNDCILEQEMEEIRQVKLNSGKGASALKLAQCLYRSDKENWPKTFGIALEETNCD
LKNLWNFRDDCREVTDVEMTDDEDDSCAVNINLQYMEDAQLDNLSRNPCFPLCSPSEPCQ
QSTYFPKKARSYQTELAQPALSGKHTIICAPTGSGKTFVSLMICDHHLRNRPAGQKGKVV
FLATKVPVYEQQKKVFQEHFERSSYTVAGICGETATNTPVAMVIEGNDITVMTPQILLNC
LNDGTLPSLSLFTLMIFDECHNTTGNHPYNVLMSKYLQLKFENAETPLPQIVGLTASLGV
GSAKSLEETIEHICTVCAALNAQVISTVKENTKDLEEIVYKPHKTIRLIQKRPQSRFVDI
ISHMMSQTEDLAKNLYPIDTLSDIKCRSFGTQKYEQWIVGVQKRCSVLQLPNKEEESKIC
RALFIYTEHLRKYNDALIINEDARTQDALAYLKEFFENIKAGGFDEIEEKLASNFEDKLQ
EMIAISQDESNENPKLEDITFILEEEYRLKPQTRSILFVKTRALVAALKNWIEESPHLKH
LKPDALMGRGKRNQNTGMTLPNQKGVLDSFKSDGDSKMLIATSVADEGIDIAQCNLVLLY
EYIGNVIKMIQVRGRGRAKDSKCILVTSKSERAETEKNNMLKEEMMNKAINNLQKWDEET
FTQKIKDLQMKQKLKQDSRKKESPPRLLPGSRRLLCGKCKRFACDSESIRVIEGAHHTVL
DGNFRNRFLTQPHNKPNRYGNFEKRCKLYCNECHHDWGITVKYMNLEDLPVIKVESFSIE
DPVSERQYYFRKWKDVDFPMKAFAIEEMSS
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggagcagagagagaatctcttttgcttccgcagttacatagagaagtcgctg
aacccgacctatgtcttgagctacatgaaggagtggctctcggatgaggatgtggagaaa
attcagaaggagggagataaagaaggcccgacagcggctgctacactttttctccaaagc
attctggacctcaaagaagacggatggttccgtggctttttggacgctttgcactcagca
ggctacagcggcctttataaggcaattcagtcttgggatttccagttgattgaaaacctg
gaagagcatagacagttgctgaaaaggatcgaaccctctttgcgagacattgatcccgtc
cagctactttcatacttaaatgactgcatcctagaacaggagatggaagaaattcgacag
gttaaactcaacagtggcaaaggagcaagtgcattaaaattagctcagtgcctgtatcgg
tcagataaggaaaactggcccaaaacctttgggatagcattggaggagacgaattgtgat
ctcaaaaatctctggaattttagagatgattgcagggaagtcacggatgttgaaatgacg
gatgacgaggatgacagctgtgctgttaatataaatttgcagtatatggaagatgcacaa
cttgacaatttgagcagaaatccctgcttccctttgtgttccccttcagaaccgtgtcag
cagtccacttattttccaaagaaggcaagaagctatcaaactgaactcgcccagcccgct
ctcagtggcaaacataccatcatttgtgcccctactgggtctgggaagacttttgtgtcc
cttatgatctgtgatcatcacctccgcaacaggcctgctgggcagaaagggaaggttgtc
ttccttgctaccaaagtcccagtgtacgaacagcagaagaaagttttccaagagcatttt
gaaagaagcagctatactgttgcaggaatctgtggggagacagctacaaatactcctgta
gccatggttattgaggggaatgatattacagtcatgacaccccagattcttctcaactgt
ctcaatgatggaacgctgccttccctttcgctcttcacactgatgatttttgatgagtgc
cacaacacaaccggtaaccatccttacaatgtgttgatgtccaagtacctgcaacttaaa
tttgagaacgcagaaacgccactgccacagattgtaggattgacagcctctcttggagtg
ggcagtgccaaaagtcttgaggagaccatagaacacatctgcacagtttgtgccgcgctc
aatgcccaggtcatatcaaccgtcaaagagaacaccaaagacttggaggaaattgtctat
aagccacacaaaacaattaggcttattcagaaacgtccccaaagtcgctttgtggacatt
atttcacacatgatgtctcaaacggaagatctggcaaaaaacctttatcctatagatact
ttgtctgacattaagtgcagaagttttggcacacagaaatatgaacagtggatagttggt
gtacagaagagatgctcggtgttacagctgccaaataaggaggaagaaagcaagatttgc
agggctctgtttatttacacggagcatctccggaaatacaatgacgctctcatcattaat
gaagatgctcgtactcaggatgcgctggcttacctgaaagaattttttgagaatatcaag
gctggagggtttgatgaaattgaagagaagctagcttcaaactttgaagataaattacaa
gagatgattgcaatttctcaggatgagtccaatgaaaatcccaaattggaagacattact
ttcatcttggaggaagaataccgcctcaaaccccaaactcgttctattctctttgttaag
acaagagcactggtggcagccttaaagaactggatagaagaaagccctcatcttaaacac
ctaaagcccgacgccctgatgggacgtgggaaaagaaatcagaacacaggtatgaccctt
ccaaatcagaaaggcgtcttggattccttcaaaagtgatggggacagcaagatgctcata
gctacatcagtagctgatgaaggaatcgatattgcacagtgcaaccttgtcctcctgtat
gaatacataggcaacgtcatcaaaatgatacaagtcagaggtcgtggaagggcaaaagac
agcaagtgcatccttgtgaccagcaaaagcgaacgggccgagacagagaagaacaacatg
ttgaaggaggagatgatgaacaaagccattaacaacctgcagaagtgggatgaagagaca
ttcacacagaagataaaagacttgcaaatgaaacagaagctaaagcaagattctaggaaa
aaagaatctccaccaaggctgctgccaggcagtcgaagactgttgtgtgggaaatgcaaa
aggtttgcctgtgactcagagagcatcagggtgattgagggagcccaccacactgtctta
gatgggaactttaggaaccgctttctaacacagcctcataacaagccaaaccgctatggc
aactttgagaaacgatgcaagctgtactgcaatgaatgtcaccatgactgggggattacc
gtgaaatacatgaacttagaggacctgcccgtcatcaaagtggagagtttctcaatagaa
gaccctgtctctgagcggcagtattatttccggaagtggaaagacgttgattttccaatg
aaagcatttgccattgaagaaatgtccagttga
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