Eublepharis macularius (Leopard gecko): 129340208
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Entry
129340208 CDS
T09084
Symbol
EFTUD2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
emc
Eublepharis macularius (Leopard gecko)
Pathway
emc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
emc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129340208 (EFTUD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
emc03041
]
129340208 (EFTUD2)
Spliceosome [BR:
emc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
129340208 (EFTUD2)
Complex C
U5 SnRNP specific factors
129340208 (EFTUD2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
129340208
NCBI-ProteinID:
XP_054850823
UniProt:
A0AA97K671
LinkDB
All DBs
Position
12:complement(33432057..33466507)
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AA seq
972 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDDDDDEMGRESKDLDELDDDDDDDDMGDHDEDHPGMDVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFSLMEQTLPITVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
IKSTPVTIVLPDTKGKSFLFNVMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
SPLLGNVCFASSQYSICFTLGSFAKIYADMYGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PTSSSQRSFVEFVLEPLYKILAQVVGDVDTTLPRTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVQHIPSPKAGAKTKIEHTYTGGVDSDLGEAMSECDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKTLLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggatacagatctttatgatgagtttgggaattacattggtccagaacttgattctgat
gacgacgatgatgagatgggccgagagtcaaaagatcttgatgagcttgatgatgatgac
gatgatgatgatatgggggaccatgatgaagaccaccctgggatggatgtggtgctgcat
gaggataagaaatactatccaactgctgaggaggtctatgggccagaggtggagaccata
gtgcaggaggaagacacacagcctctgactgagcctattattaaaccagtgaagaccaaa
aaattctccctcatggagcaaacattaccaatcacagtatatgagatggacttcctagca
gacttgatggacaactcagaattgatccgaaatgtcacactttgtggccacttgcaccat
ggcaagacttgctttgtggattgtctgattgagcagactcatcctgagattaggaagcgg
tatgaccaggatctttgctatacggatatcctgttcacagaacaagagaggggagttggg
atcaagagcacaccagtgaccattgttcttccagacaccaaaggcaaatcatttctcttc
aacgtcatggacacaccaggtcacgtaaacttctctgatgaagtcacagctggccttcgc
atttctgacggtgtggtgctttttattgatgctgctgagggggtcatgctcaacaccgag
aggttgatcaagcatgcagtgcaggagaggttggcagtgaccgtgtgtattaataagatt
gaccggctgatcctggaactgaagctgccccctactgatgcctactacaagctacggcac
attgtggatgaagtcaatggcttgatcagcatgtattccacagatgagaatctgatcctt
tctccactcctcggcaacgtctgtttcgccagctcccagtacagcatctgcttcaccctg
ggttcttttgccaagatctatgctgatatgtacggagacatcaattaccaggagtttgcc
aagaggctttggggagacatctacttcaacccaaagacgaggaagttcactaaaaaagct
ccgactagcagttcccagcgcagctttgtggagtttgttcttgagcctctctacaagatc
ttggctcaggtggttggggatgtggataccacccttcccaggactctagatgagctgggg
atacacctgaccaaagaggagctgaagctcaacatccgccctctcctaaggcttgtctgc
aagaagttttttggagagttcacgggttttgtggatatgtgtgtgcagcacatcccctct
ccaaaagcgggagcaaagaccaaaattgagcacacctacacaggaggagttgactctgac
ctgggagaggccatgagcgagtgtgatcctgatggcccgctcatgtgccacaccacaaag
atgtacagcacagatgacggggtccagttccatgcatttggcagggtgctgagtgggacc
atccacgcaggccagcctgtcaaagtcctcggagaaaactacaccctggaagacgaggag
gattcacaaatttgcactgtgggacgcctttggatctcagtggcaaggtaccacatagaa
gtcaacagagtccctgctggcaactgggttcttattgagggggtagaccaacctattgtg
aagacagccaccatcaccgaacccaggggcaatgaagaggctcagatcttccgtcccttg
aagttcaacaccacatccgtcatcaaaatagcagtggagcctgtaaacccttctgagctc
cccaagatgctggatggcctgcgaaaagtcaacaagagctacccctctctcaccaccaag
gtagaagaatccggggaacatgtgatcctgggcacaggcgagctctatcttgactgtgtg
atgcatgacctacggaaaatgtactcagagatcgacatcaaggtcgctgatcctgtggta
acattctgtgagactgttgtagaaacgtcttccctgaagtgttttgctgagacacccaat
aagaagaacaagatcacaatgattgctgagcctctggaaaagggtctggcagaagacatt
gagaatgaagtggtgcaaatcacatggaacaggaaaaagttgggagagtttttccagacc
aagtacgactgggatttgctggctgcccgttccatctgggcttttgggccagatgctact
gggccaaacatcctggtagatgataccctgccctcggaggttgacaaaaccctgttgggc
tctgtgaaagacagcatcgtgcagggcttccagtgggggaccagggaaggacctctctgt
gatgagttgatccgcaatgtcaagttcaagatcctggatgcggtgattgcccaggagccc
ttgcatcggggaggggggcagatcatcccaaccgccaggagggtggtgtattccgcattt
cttatggccacaccacggctgatggagccctattactttgtggaggtccaggcacctgct
gactgtgtgtctgcagtgtacactgtcctagcccggcgtagaggacatgttacgcaggat
gcgccaatcccaggctcccctttgtacaccatcaaagccttcatcccagcaatagactcg
tttgggtttgagacggacctcaggacacacacccagggacaggcattttctctatccgtc
ttccaccactggcagattgtgccaggagatcctttggacaaaagcattgtgatccgacct
ctggagccccagcccgcccctcatctggccagagagttcatgatcaagaccaggcgcagg
aagggtttgagcgaagatgtgagcatcagcaagttcttcgacgaccccatgttgctggag
ctggccaagcaggacgtggttctgaactaccccatgtga
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