Elusimicrobium minutum: Emin_1227
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Entry
Emin_1227 CDS
T00741
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
emi
Elusimicrobium minutum
Pathway
emi03030
DNA replication
emi03410
Base excision repair
emi03420
Nucleotide excision repair
emi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
emi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Emin_1227
03410 Base excision repair
Emin_1227
03420 Nucleotide excision repair
Emin_1227
03430 Mismatch repair
Emin_1227
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
emi03032
]
Emin_1227
03400 DNA repair and recombination proteins [BR:
emi03400
]
Emin_1227
Enzymes [BR:
emi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Emin_1227
DNA replication proteins [BR:
emi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Emin_1227
DNA repair and recombination proteins [BR:
emi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Emin_1227
NER (nucleotide excision repair)
GGR (global genome repair) factors
Emin_1227
MMR (mismatch excision repair)
DNA ligase
Emin_1227
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Emin_1227
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH_5
5_3_exonuc
HHH
BRCT_2
RNA_ligase
MazE_antitoxin
Motif
Other DBs
NCBI-ProteinID:
ACC98777
UniProt:
B2KE31
LinkDB
All DBs
Position
complement(1326624..1328594)
Genome browser
AA seq
656 aa
AA seq
DB search
MDKIKKEIEDLRSKINYHNNLYYNLDNAEISDAEYDGLYARLKFLEAMNPDYADAASPTQ
KIGGAASRVFTSVTHASQMMSLDNTYSSEEVLRWHERCVKSLGHGNFEMVAEAKIDGVSC
SLTYEGGVLTVAATRGDGKTGEDVTANIKTIKTIPHNISFKNKIEIRGEIYIEKADLKRL
NEIQENEGENIFANTRNAAAGSIRQKNAEISASRPLKFFAHSFGYGDVDVKGFAEFMDLC
KSWGFSVTPNRIRTADINEITSFYKRFEELRAGLPYDVDGIVVKINSFAEQKILGVTAKS
PRWAIAFKYKPPQGKTVVNKIIFSVGRTGIITPVAELEPVAVAGVIISNATLHNFDEIKR
LGVKEGDTVIVERAGEVIPKILNVVKDGGGNEVKAPKNCPSCGSKVYRYEDEVAIRCINP
ACPAQIKGHLLHFVSRAAMDIDGFGEAVVEQVVEKKYVKDFADIYNLKAEQLLTLDLFKD
KKVNNLLLAVEASKKRSLSRVLYAFGIRHVGQKTGEILANHFEDIENMLAASLEDFQKIN
EIGPVVGQSVYDFMQSAKGKEEIARLKTAGVNFTQPKVQLAGNELLGKTLVFTGELNMPR
TQAEALAKAHGGKVSGSVSSKTSYVVAGADAGSKLTKAQSLGVSVISEEEFLNLIK
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atggacaaaattaaaaaagagatagaagatttaagaagcaaaatcaactatcataataac
ctttactacaatttggacaatgccgaaatttcggatgcggagtatgacggtttatacgcc
aggctgaaatttttggaagccatgaaccccgactatgcggacgccgcgtcgcccacacaa
aaaatagggggcgctgcttcgcgcgtttttacgtctgttacgcacgcttcgcaaatgatg
tccttagacaacacctattcctccgaagaggttttgcgctggcatgaacgctgcgtaaaa
agtttgggccacggaaattttgaaatggtggccgaggctaaaattgacggcgtttcctgc
tcgcttacttatgaaggcggcgttttaacggttgccgccacaaggggcgacggcaaaaca
ggtgaggatgttaccgcaaatattaaaacaataaaaacaattccgcataatatttctttt
aaaaataaaatagaaatacggggcgagatttatatagaaaaagcggacttaaagcggctt
aatgaaatacaggaaaacgaaggggaaaatatttttgccaacacccgtaacgccgcggcg
ggcagcataaggcaaaaaaacgcggaaataagcgcctcgcgccctttaaaatttttcgcc
cattcattcggttacggcgatgttgatgttaaaggttttgcggagtttatggatttatgt
aaatcatggggattttcggttacgccaaatagaataagaacggcggatattaatgaaata
acgagtttttataaaaggtttgaggaactaagggcgggtttgccctatgacgttgacggc
attgtcgttaaaataaacagttttgccgagcaaaaaattttaggcgttaccgccaaaagc
cctcgctgggcgatagcttttaaatataaaccgccgcagggcaaaacagttgtaaataaa
ataattttttcagtgggaaggacgggtattattactccggttgccgagttagaacctgtt
gccgtggcgggcgttataatttcaaacgctactcttcataattttgatgaaataaaacgc
cttggcgtaaaagagggggacactgttattgtagagcgcgcgggggaagttatacccaaa
attcttaatgttgttaaagacggcggcggcaatgaagttaaggctcctaaaaactgtcct
tcctgcggttctaaagtttaccggtatgaggatgaagttgccataagatgcataaacccc
gcctgcccggcgcagataaaggggcatttgcttcattttgtttcgcgcgcggccatggat
attgacggttttggcgaagccgtggtcgagcaggttgttgaaaaaaaatatgttaaagat
tttgccgatatctacaatttaaaagcggagcagcttttaacgctggacctttttaaagat
aaaaaagtaaataatcttttattggcggtggaagcttctaaaaaacgttctttaagccgt
gttctgtacgctttcggcataaggcacgtaggccagaaaacgggtgagatactcgccaac
cattttgaggatattgaaaatatgcttgccgcttctttagaagactttcaaaaaataaat
gaaataggcccggtggtaggtcaaagtgtttatgattttatgcaaagcgcaaaaggcaaa
gaagaaattgccaggcttaaaacggctggcgttaatttcacgcagcctaaagtgcaactg
gctggtaatgagcttttgggcaaaacgcttgtttttacgggtgaactcaatatgcccaga
acgcaggccgaagcgcttgccaaagcgcacgggggcaaagtgtcgggctcggtttcttcc
aaaacaagttatgtcgtggccggagcggacgccggcagcaaacttaccaaggctcaaagc
ttaggcgtaagcgtgataagtgaagaggaatttttaaatttgataaaataa
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