Elizabethkingia anophelis FMS-007: M876_03995
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Entry
M876_03995 CDS
T03946
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
emn
Elizabethkingia anophelis FMS-007
Pathway
emn03030
DNA replication
emn03410
Base excision repair
emn03420
Nucleotide excision repair
emn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
emn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M876_03995
03410 Base excision repair
M876_03995
03420 Nucleotide excision repair
M876_03995
03430 Mismatch repair
M876_03995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
emn03032
]
M876_03995
03400 DNA repair and recombination proteins [BR:
emn03400
]
M876_03995
Enzymes [BR:
emn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
M876_03995
DNA replication proteins [BR:
emn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
M876_03995
DNA repair and recombination proteins [BR:
emn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
M876_03995
NER (nucleotide excision repair)
GGR (global genome repair) factors
M876_03995
MMR (mismatch excision repair)
DNA ligase
M876_03995
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
M876_03995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
RNA_lig_T4_1
BRCT_2
RNA_ligase
DUF7575
Dna2
SpoOE-like
Zn_ribbon_3
zf-IS66
A2L_zn_ribbon
Motif
Other DBs
NCBI-ProteinID:
AKH93727
LinkDB
All DBs
Position
complement(840850..842856)
Genome browser
AA seq
668 aa
AA seq
DB search
MSENIQQQIEELREELHQHNYNYYILDEPSISDFEFDAKLKELQDLEAQYPEFNDPNSPT
LRVGGGVTKNFPTVQHQFRMYSLDNSYDFNDLEDWEKRIIKTIDEPVEFVAELKYDGASI
SILYENGKLSQAVTRGDGFQGDEITSNVRTISDVPLKLKGEFPERFYMRGEIYLTRKNFD
KINALREEEGLDPFMNPRNTASGSLKMQDSGEVRKRGLSAVLYQYIAENFPAETHWDLLA
NAKQWGFRVSEDQAKLCRTLDDVKNFINYWDQERHNLPFEIDGIVIKVNSLKHQRELGYT
AKSPRWAMAYKFKAEKVETELLSVSYQVGRTGAITPVANLRPVLLAGTTVKRASLHNEDI
IKKLDLHENDFVYVEKGGEIIPKIVGVNTEKRTSESKEIEYIKHCPECGTELVKIEDQAI
HFCPNELHCPPQVVGRMIHYVSRKALNIENLGGETIEQLYREKLIENPADLYTLTKEQLL
PLERMAEKSAQNILDGLEKSKEIPFEKVLYGIGIKHVGETVAKKLVKNFPSIEELKNATE
EELCQVEDIGAKIAVSITEFFANQENLLMIERLKNYGVQLEKGENINDVISNVLDGKNFL
FTGKLSLFTREQAEEMVEKHGGKNISAVSKNLNYLIVGEKAGSKLKKAQDIGTITILDEQ
QFLDLVNS
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaaaacattcaacaacaaatagaagagctaagagaagagcttcatcagcataat
tacaattactatattctggatgaaccttctatctcggattttgaattcgacgcaaaactg
aaagagcttcaggatttggaagctcagtatccggagttcaatgatcctaactcacctact
ttgcgtgttggcggcggggttaccaaaaactttcccactgtacaacaccagtttagaatg
tactctctggataattcatacgacttcaatgatctggaagattgggagaaacggataata
aaaaccattgatgaacccgtagaatttgttgcagaactaaaatacgatggtgcttctatt
tccattctttatgaaaacggaaaattatcacaggcagtaacccgtggagatggctttcag
ggtgatgaaattacaagtaatgtaagaactatttcagatgttccgttaaaattaaaaggt
gagttccctgaacgtttttatatgcgtggagaaatttatcttacccgaaaaaacttcgac
aaaattaatgcactgcgtgaagaagaggggcttgatccttttatgaatccacgaaataca
gccagcggaagccttaaaatgcaggattccggtgaggtaagaaaacgtggactttctgca
gtattatatcaatatatcgcggagaattttcctgcagaaacccactgggacttattagcc
aatgcaaaacaatggggcttccgggtttccgaagatcaggcaaaattatgcagaactctg
gacgatgtaaaaaatttcatcaattactgggatcaggaaagacataacctgccttttgag
attgatggtattgttataaaggtaaactccctaaaacaccagcgtgaattgggctatact
gccaaatcaccacgttgggccatggcctataaattcaaggctgagaaagtagaaactgag
ctcctgagtgtttcttatcaggtcggaagaactggcgctattactcctgtagccaatctt
cgtccggttctattagccggaacaactgtaaaacgtgcatcactgcataatgaggatatt
atcaaaaaactagatcttcatgagaacgacttcgtttatgtagaaaaaggcggtgaaatc
atccctaaaattgtgggtgttaataccgagaaaaggacatctgaaagcaaagaaatagaa
tatataaagcattgtccggaatgcggcactgaacttgtaaaaatagaagatcaggctata
catttttgtccgaacgagctgcactgcccaccacaggtagtcggaagaatgatccactat
gtttcccgtaaagcattgaatatagaaaatctgggtggtgaaactatcgaacaactttac
cgtgaaaagctaattgaaaatccagccgatctttataccctaaccaaagaacaactgctt
ccgctagagcgtatggcagagaaatctgcacaaaatattctggatggtctggaaaaatca
aaagaaataccttttgaaaaagtattgtacggaataggcatcaagcatgtaggagaaaca
gttgctaaaaaactggtcaaaaacttcccaagcatagaggaattaaagaatgcaacagaa
gaagagctttgccaggtagaagatatcggggcaaaaatcgctgtaagcattactgaattc
tttgcgaatcaggaaaaccttctgatgatagaacgtctgaaaaattatggtgtacaactg
gaaaaaggggaaaacattaatgatgtaatcagtaatgtcctggacggaaaaaatttcctg
ttcaccggaaaattatctcttttcaccagagaacaggctgaagaaatggtagaaaagcat
ggtggcaaaaatatttctgctgtgtctaaaaatctaaactacctgattgttggagaaaag
gcaggaagcaaactgaaaaaagctcaggatatcggaactataacgattctggatgaacag
caatttttggatcttgtcaatagttaa
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