Enterobacter mori: L6Y89_15600
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Entry
L6Y89_15600 CDS
T08239
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
emor
Enterobacter mori
Pathway
emor03030
DNA replication
emor03410
Base excision repair
emor03420
Nucleotide excision repair
emor03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
emor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
L6Y89_15600 (ligA)
03410 Base excision repair
L6Y89_15600 (ligA)
03420 Nucleotide excision repair
L6Y89_15600 (ligA)
03430 Mismatch repair
L6Y89_15600 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
emor03032
]
L6Y89_15600 (ligA)
03400 DNA repair and recombination proteins [BR:
emor03400
]
L6Y89_15600 (ligA)
Enzymes [BR:
emor01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
L6Y89_15600 (ligA)
DNA replication proteins [BR:
emor03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
L6Y89_15600 (ligA)
DNA repair and recombination proteins [BR:
emor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
L6Y89_15600 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
L6Y89_15600 (ligA)
MMR (mismatch excision repair)
DNA ligase
L6Y89_15600 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
L6Y89_15600 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
RNA_ligase
Prok-E2_C
DZR_2
DUF2229
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
UKJ20186
LinkDB
All DBs
Position
complement(3307777..3309792)
Genome browser
AA seq
671 aa
AA seq
DB search
MDSIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELETQHPELITPDSPTQ
RVGAEPLGAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSSDSLSWCCELKLDGLA
VSILYENGVLVRAATRGDGTTGEDITTNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAG
FEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHL
GRLLQFKAWGLPVSNRVQLCDSPEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVESERPAETREIVFPTHCPVCGSDVERVEG
EAVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAG
KLTGLDRMGPKSAQNVVNALEAAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEK
ASIDELQKVPDVGIVVATHVFNFFAEESNREVIGKLLEEGIKWPAPVVVNAEEIDSPFAG
KTVVLTGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVI
DEAEMMRLLGE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggactcaatcgaacaacaactcactgaactgcgaaccacgcttcgccatcatgaatac
ctctatcatgttatggacgcgccggaagttccggatgcggagtatgaccgtctgatgcgc
gagctgcgcgagctggaaactcaacatccggaattaatcacgccggactccccgacgcag
cgcgtcggtgcggaaccgctgggtgctttcagtcaggtacgccacgaagtcccgatgctg
tccctggataacgtctttgatgaagagagtttcctggcgtttaacaagcgcgtccaggat
cgtctgaaaagcagtgattcgctgagctggtgctgcgagctgaagctggacggtctggcg
gtcagcattctttatgaaaacggcgtgctggtgcgtgccgcgacgcgtggtgacggtacg
acgggcgaagacatcaccaccaatgtgcgtaccatccgcgcgatcccgctcaagctgcac
ggcgagaatattcctgcgcgtctggaagtgcgcggtgaagtgttcctgcctcaggcgggc
ttcgagaaaataaacgaagaggcacgccgcaccggcgggaaggtgtttgcgaacccacgt
aatgcggcggcaggctctctgcgccagcttgacccgcgtatcaccgcgaagcgaccgctt
actttcttctgctacggtgttggtattctggagggtggcgagctgccggatacgcacctc
ggacgtctgctgcagtttaaggcgtggggtctgccggtcagtaaccgcgttcagctctgc
gactctccggaggaggtcctggcgttctaccacaaagtggaagaggatcgcccaacgctc
ggctttgatattgatggcgttgtcatcaaggtcaattcactggcgctgcaggaacagctg
ggctttgtggcacgcgcgccgcgctgggcggtggcgtttaagttccctgctcaggagcag
atgaccttcgttcgtgacgtagagttccaggttggccgtacgggtgccattaccccggtc
gcccgtctggagcccgttcaggttgcgggtgtactggtgagtaacgccacgctgcataac
gctgatgaaatcgaacgcctgggcctgcgcattggggacaaagtggtgatccgccgcgcg
ggcgatgtgatcccgcaggtggttaacgttgtggagtcagaacgccctgctgaaacgcgc
gagatcgtcttcccgacccactgtccggtgtgcggctcggacgttgagcgtgtggaaggc
gaagcggtggcgcgctgtacgggcggcttaatttgtggcgcgcagcgtaaagagtcgctg
aagcatttcgtctcccggcgggcgatggacgtcgacggcatgggcgataaaattatcgat
cagctggttgagaaagagtacgttcacacgccagcggatctgttcaaactgaccgcgggt
aaactgaccggcctggatcgcatggggccgaagtcagcacagaatgtcgttaacgcgctg
gaagcggcgaaagagaccaccttcgcccgcttcctgtacgcgctgggcattcgtgaagtc
ggcgaagcgacagcggcagggctggcggcgtactttggtacgctggaggcgctggaaaag
gcaagcatcgacgagctgcaaaaagtaccggatgtcggcattgtggtcgccacgcacgtc
tttaacttctttgctgaagagagcaaccgtgaggtcatcggcaaactgctggaagagggc
atcaaatggcccgcgccggtggtggtcaatgcagaagagatcgacagtccgtttgccggt
aaaaccgtggtgctgactggcagcctgagccagctttcccgtgacgacgctaaagcgcgt
ctggtggcgctgggggccaaagtggcaggcagcgtatcgaagaaaaccgacctggtgatc
gccggggaagcggccggttcgaagctggcgaaagcccaggagcttggcattgccgttatc
gacgaagccgaaatgatgcgcctgttaggagagtaa
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