Endozoicomonas montiporae: EZMO1_3532
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Entry
EZMO1_3532 CDS
T09822
Symbol
dnlJ
Name
(GenBank) DNA ligase (NAD(+))
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
emp
Endozoicomonas montiporae
Pathway
emp03030
DNA replication
emp03410
Base excision repair
emp03420
Nucleotide excision repair
emp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
emp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EZMO1_3532 (dnlJ)
03410 Base excision repair
EZMO1_3532 (dnlJ)
03420 Nucleotide excision repair
EZMO1_3532 (dnlJ)
03430 Mismatch repair
EZMO1_3532 (dnlJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
emp03032
]
EZMO1_3532 (dnlJ)
03400 DNA repair and recombination proteins [BR:
emp03400
]
EZMO1_3532 (dnlJ)
Enzymes [BR:
emp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EZMO1_3532 (dnlJ)
DNA replication proteins [BR:
emp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EZMO1_3532 (dnlJ)
DNA repair and recombination proteins [BR:
emp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EZMO1_3532 (dnlJ)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EZMO1_3532 (dnlJ)
MMR (mismatch excision repair)
DNA ligase
EZMO1_3532 (dnlJ)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EZMO1_3532 (dnlJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
5_3_exonuc
RNA_pol_A_CTD
HHH
Motif
Other DBs
NCBI-ProteinID:
AMO57515
UniProt:
A0A142BFI9
LinkDB
All DBs
Position
complement(3912582..3914636)
Genome browser
AA seq
684 aa
AA seq
DB search
MTDLNLFSQEDVEQEIQSLRQQINHHNHRYYVLDDPQISDAAYDKLLQHLKQLETEYPEL
VTEDSPTQRVGAPALKEFGQVRHEMPMLSLDNAFNEDDLKDFNRRVKERLTETGDIEYAC
EPKLDGIAVSLLYENGLLVRGATRGDGTTGEDITLNVRTIPSIPLKLMGNGWPQRLEVRG
EIFMPKEGFEKMNARARAREEKVFVNPRNAAAGSLRQLDSKVTARRPLDMYCYSAGIVEG
GSLPEKHADILEQFSQWGLRINPEMQVVTGIKACEAYYEQLAEKRPDLPYEIDGIVYKVN
DLAMQEQLGFVARAPRWAIARKFPAQEEMTLLKDVEFQVGRTGAITPVARLEPVFVGGVT
VSNATLHNMDEITRLDLKIGDTVIVHRAGDVIPKVVGVVHSRRPSEDQLREIVMPDTCPV
CDSEIEQDEGEAAARCSGGLYCSAQRKEAIKHYASRKALDIEGLGDKLVDQLVARGLINT
VADLYRLTVEQVSGLERMGKKSATNLVNALDRSRTTTLARFIYALGIREVGEATARSLVS
HYKELEAIRSVCVDDLQTVDDVGPVVASHIEKFFRQPHNQEVIAELIEQGVHWPTVEAPA
AGTEQPLAGETWVLTGTLHSMTRDQGKEILQQLGAKVSGSVSAKTTVLLAGEKAGSKLTK
AQNLGVKVISEDDFMALKTDWGVE
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgactgacctaaatctattctctcaggaagacgttgagcaggaaattcagagcctgcgt
cagcagattaatcaccataatcatcgctactatgtgctggatgatccccagatcagcgat
gccgcttacgataagctgctgcaacatctgaaacagctggaaacggaatatcctgagctg
gtgacggaagactctccgacccagcgtgtcggggcaccggccttgaaagagtttggtcag
gtgcgccatgaaatgccgatgctgtcgctggataacgcttttaatgaagatgacctgaag
gactttaaccgccgtgtcaaagagcgtctgacggaaacaggtgatattgaatacgcctgt
gaaccgaaactggatggcattgctgtgagcttgctgtacgagaatggtttgctggtgcgc
ggagctacccgtggtgacggtaccaccggagaagatatcaccctgaatgtacgcaccatt
ccttctattcctctgaagcttatggggaatggctggccacagcggctggaagtacgggga
gaaattttcatgcctaaagaaggctttgaaaaaatgaatgcccgcgcccgggccagagaa
gaaaaagtatttgttaatccgcgcaatgcagccgcaggcagtttgcgccagctggattca
aaggtgacggcacgtcggccgctggatatgtactgctacagtgccggtattgttgaaggt
ggcagcctgccggaaaaacacgccgacattctggagcagttcagtcaatgggggttgcgc
attaaccccgaaatgcaggtggtaacaggtataaaagcctgtgaagcctattacgaacag
ctggcagaaaaaaggccggatctgccttatgaaatagacggcattgtctataaagtgaat
gatctggcgatgcaggaacagctgggttttgttgcccgtgcgccacgctgggcgattgcc
cgcaagtttcctgcccaggaagagatgactctgctgaaagatgtggaatttcaggtgggt
cgcaccggtgcgattacaccggtggccagactagagcctgtgtttgtgggtggcgttact
gtcagtaatgccactctgcacaatatggacgaaatcacccggctcgatctgaagattggt
gacactgtgattgtccaccgggcaggagatgttatcccgaaagtcgtgggtgtcgtacac
tcccgccgaccttctgaagaccagttgcgtgagatagtgatgccagacacctgtccggtg
tgtgattctgaaattgagcaggatgaaggggaagcagctgcccgctgttctggtggattg
tactgttcggcacagcgtaaagaagccatcaagcattacgcttcccgcaaggcactggat
attgaagggctgggtgataagctggtggatcagctggttgccagaggtttgattaatacc
gtggctgacctgtatcgcctgaccgtcgaacaggtgtcaggtctggaacgcatgggcaaa
aaatcggccacgaacctggtcaatgcgctggatcgtagtcgtacgacgacgcttgcccgt
tttatttatgcgctgggcattcgggaagtgggtgaagccaccgcacgcagcttggtcagt
cattacaaagagctggaagcaattcggtcagtgtgcgttgatgacctgcaaacggtggac
gatgtcgggccggtagtggcatcccacatcgaaaagtttttccgacagcctcataatcag
gaagtgattgctgaactgattgaacagggtgtgcactggccaacggttgaagctccggcg
gcaggaacggaacagccgcttgccggtgaaacctgggtattgaccggcactttgcactct
atgaccagagatcaggggaaagaaatcctgcaacagctgggtgccaaggtgtccggctcg
gtttcagccaaaacaacagtactgctggcgggtgaaaaggcaggatcaaagctgaccaag
gctcagaatctgggcgttaaggtcatttccgaagacgattttatggcactgaaaacggac
tggggcgttgaatga
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