Erythrobacter mangrovi: HQR01_10475
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Entry
HQR01_10475 CDS
T06812
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
emv
Erythrobacter mangrovi
Pathway
emv03030
DNA replication
emv03410
Base excision repair
emv03420
Nucleotide excision repair
emv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
emv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HQR01_10475 (ligA)
03410 Base excision repair
HQR01_10475 (ligA)
03420 Nucleotide excision repair
HQR01_10475 (ligA)
03430 Mismatch repair
HQR01_10475 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
emv03032
]
HQR01_10475 (ligA)
03400 DNA repair and recombination proteins [BR:
emv03400
]
HQR01_10475 (ligA)
Enzymes [BR:
emv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HQR01_10475 (ligA)
DNA replication proteins [BR:
emv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HQR01_10475 (ligA)
DNA repair and recombination proteins [BR:
emv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HQR01_10475 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HQR01_10475 (ligA)
MMR (mismatch excision repair)
DNA ligase
HQR01_10475 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HQR01_10475 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
PTCB-BRCT
Nlig-Ia
DZR_2
Motif
Other DBs
NCBI-ProteinID:
QKG71752
UniProt:
A0A7D3Y0E0
LinkDB
All DBs
Position
complement(2055224..2057305)
Genome browser
AA seq
693 aa
AA seq
DB search
MGIDQTVPVDMSEADAANELMRLAKAIAYHDRLYHAEDTPEISDPEYDALVRRNAAIEAA
FPHLVRDDSPSRKVGFAIAASPLSKVTHEVRMMSLDNAFSAEEVEEWVARVRRFLALPEN
EVIAFTAEDKIDGLSCSLRYEKGVLVRAATRGDGQVGEDVTANVQHIADIPKMLRGNAPV
VFEVRGEVYMEKQAFAALNAAQQEVGGKLFANPRNAAAGSLRQKDANVTAQRPLRFWAHG
WGAASAIPGTTQHGMVEILRAWGFPISPLFVQVDGVEGLLSRYAAIGRARPDLPYEIDGV
VYKVDRLDWQQRLGFVAKAPRWALAHKFPAERAETTLEAIDIQVGRTGKLTPVGRLAPVL
VGGVTVTNVTLHNRDEIGRLGVRPGDRIVIQRAGDVIPQVVENLTRDVEREPFVFPDHCP
VCGSEAVAEDGEVDVRCTGGLICKAQQFERLRHFVSRAALDIEGLGEKSIAEFMELGWLA
SGPADIFRLRDHRGDLIGREGWQEKSVDNLLASIEAKRSPDAARLLFGLGIRHVGAVTAR
DLMKNFHELPVLRATAERAHAGEAEALAALTSIDGIGGAVVEALGDFFHEEHNRAVWDDL
LSEVTPPPYIVETKDSAVAGKTVVFTGKLETMSRDEAKAQAERLGAKAAGSVSAKTDLVV
AGPGAGSKLKKAAELGIEVIDEAAWAEIVAAAG
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgggaatcgaccaaactgtgcctgtggacatgagcgaagccgatgctgccaacgagctg
atgcggctggccaaggcgatcgcgtatcacgaccggctgtatcacgccgaagacacgccc
gagatcagcgacccggaatatgatgcgctggtgcggcgcaatgccgcgatcgaggctgcg
ttcccgcatctcgttcgcgacgacagcccatcgcgcaaggtcggctttgcgattgccgcg
tcgccgctgagcaaggtgacgcatgaggttcgcatgatgagcctcgacaacgccttttcc
gccgaagaggtcgaggagtgggtagcacgcgtgcggcgcttccttgccttgcccgagaac
gaggtgatcgccttcaccgcggaggacaagatcgatggcctgtcctgttctctgcgctac
gaaaagggcgtgctggtgcgcgcggctactcgcggcgacggtcaggttggcgaggacgtg
acggcgaacgttcagcatattgccgacatcccgaaaatgctgcgcggaaatgcgcccgtt
gtgttcgaggtgcgcggcgaggtctacatggaaaaacaggcctttgccgcgctcaatgcg
gcgcagcaagaggtgggcggaaagctcttcgccaacccgcgaaatgctgcggcgggctcg
ctgcggcaaaaggatgccaatgtcaccgcgcagcgcccattgcgcttctgggcgcatggc
tggggtgcggcatccgccatacccggcacgacgcagcacggcatggtcgagatcctgcgc
gcttggggttttccgatctcgccgctgtttgtgcaggtcgatggggtcgaaggcctgctg
tcgcgctatgcggcgatcggcagggcccggcctgacctgccctatgaaatcgacggggtg
gtctacaaggtcgaccggctcgactggcagcagcggcttggtttcgtcgccaaggcgccg
cgctgggcactggcgcacaaatttcccgccgagcgcgcggaaacgacgctggaggcgatc
gacatccaggtcggccgcacgggcaagttgaccccggtgggtcgcctcgccccggtgctg
gttggcggggtgacggtgaccaacgtcacactgcacaaccgcgacgagatcgggcggctg
ggcgtgcgcccaggtgatcgcatcgtgatccagcgcgcgggagacgtgatcccgcaagtg
gtcgagaacctgacgcgcgatgtggagcgcgagccatttgtcttccccgaccactgcccg
gtttgcggcagcgaggccgtagccgaggacggcgaggtcgatgtgcgctgcaccggcggg
ctgatctgcaaggcgcagcaattcgaacggctcaggcatttcgtcagccgcgccgcgctc
gacatcgagggcctgggcgaaaagagcattgccgaattcatggagctgggctggctcgcc
agcgggccggcggacatcttccgcctgcgcgaccatcgtggtgacctgatcgggcgagag
ggctggcaggaaaagtcggtcgacaacctcctcgccagtatcgaggcgaagcggtcgccc
gatgcagcgcggttgctgttcggtctcggtatccgccacgtcggcgcggtgaccgcgcgc
gacctgatgaagaacttccatgagttgcccgtgctgcgcgcgactgccgaaagggcgcac
gcgggagaagccgaggcactggcggccttgaccagcatcgacggcatcggtggtgcggtg
gtcgaggcgctgggtgatttctttcacgaagaacacaatcgcgccgtgtgggacgatctg
ctcagcgaagtgaccccaccgccctacattgtcgaaactaaggacagcgccgtcgcgggc
aagaccgtggtcttcaccggcaagctcgaaaccatgagccgcgacgaggccaaggcgcag
gccgaacgactgggcgccaaggcggccggatcggtgagcgccaagaccgatctcgtggtc
gcgggaccgggcgcagggtcgaagctcaagaaggctgccgaactcgggatcgaggtcatc
gatgaggcggcttgggcggagatcgtggcggcagctggatga
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