Sinorhizobium mexicanum: FKV68_14220
Help
Entry
FKV68_14220 CDS
T06706
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
emx
Sinorhizobium mexicanum
Pathway
emx03030
DNA replication
emx03410
Base excision repair
emx03420
Nucleotide excision repair
emx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
emx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FKV68_14220 (ligA)
03410 Base excision repair
FKV68_14220 (ligA)
03420 Nucleotide excision repair
FKV68_14220 (ligA)
03430 Mismatch repair
FKV68_14220 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
emx03032
]
FKV68_14220 (ligA)
03400 DNA repair and recombination proteins [BR:
emx03400
]
FKV68_14220 (ligA)
Enzymes [BR:
emx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FKV68_14220 (ligA)
DNA replication proteins [BR:
emx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FKV68_14220 (ligA)
DNA repair and recombination proteins [BR:
emx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FKV68_14220 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FKV68_14220 (ligA)
MMR (mismatch excision repair)
DNA ligase
FKV68_14220 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FKV68_14220 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
FdhE_central
DUF4796_N
Zn_ribbon_PaaD
Motif
Other DBs
NCBI-ProteinID:
QLL62510
UniProt:
A0A859QJN2
LinkDB
All DBs
Position
complement(2936526..2938679)
Genome browser
AA seq
717 aa
AA seq
DB search
MLSERKPVEQLTESEAAEELAFLAAELARHDALYHGQDAPEISDADYDALKRRNDLIEAG
FPALIREDSPSRKVGAAPSLTFQPVVHARPMLSLDNTFSDEDARDFVAGVYRFLGRLPDH
SIAFTAEPKIDGLSMSLRYENRRLVTAATRGDGTTGENVTANVRTIGMIPQRLPADAPDV
VEVRGEIYMAKSDFAALNAEMAAQGRPLYVNPRNTASGSLRQLDAKVTANRKLRFFAYAW
GEMSGMPADTQLGMVETFKAWGFPVNPLMQRFSSADELLEHYHHIERERPDLDYDIDGVV
YKVDRLDLQARLGFRSRSPRWATAHKFPAEQAFTRLKGIDIQVGRTGALTPVARLEPITV
GGVVVTNATLHNEDYIRGVGNSGEPIREGRDIRIGDMVIVQRAGDVIPQIVDVVMDERAE
GAEPYKFPTTCPVCGSHAVRDINEKSGKVDAVRRCTGGFVCRAQAVEHLKHFVSRNAFDI
EGLGSKQIEFFFESEDDNLRIRTAPEIFTLERRQEASLTKLENIEGFGKVSVRKLFEAIT
NRRSIALHRFIYALGIRHVGETTAKLLARSYGSYDHFGAAMVEAGSFAGDAWNELNSIDG
IGEVVARAIVEFYKEPRNVEVVSRLLEEVTPENAEMPVVADSPVAGKTVVFTGSLEKMTR
DEAKAKAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGIQTMDEDEWLALIGG
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgttgagtgaaagaaaacccgtcgagcagttgaccgaatcggaagcggccgaagagctc
gcctttcttgcggcggagctcgcccgtcacgatgcgctttatcatggacaggacgcgccc
gaaatctcggatgcggactatgacgcgctgaagcgtcgcaacgacctgatcgaggcgggg
tttcccgcgctcatccgcgaggacagcccttcgcgcaaggtcggcgcggccccctcgctg
accttccagccggtggtccatgcgcggccgatgctgtcgctcgacaacacgttctcggac
gaggacgcccgcgatttcgtcgccggcgtctatcgcttcctcgggcggctcccggatcat
tcgatcgcctttaccgccgagccgaagatcgacgggctttccatgtcgctgcgttacgaa
aaccggcggctggtgacggccgcgacgcgcggcgacggcacgaccggtgagaatgttacc
gccaatgtccgcacgatcggcatgattccacagaggcttcccgccgacgccccggatgtc
gtcgaagtgcgcggtgagatctacatggcgaagtcggatttcgctgcactcaacgccgaa
atggcggcgcagggcaggccgctctatgtgaacccgcgcaacaccgcttccggctcgctg
cgacagctcgacgccaaggtgacggcgaaccgcaagctacggttcttcgcctatgcctgg
ggcgagatgtcgggaatgccggccgacacccaactcgggatggtcgagacattcaaggcc
tggggtttcccggtcaatccgctgatgcagcgtttctcttccgcggacgaactgctggag
cactatcatcatatcgagcgcgagcggcccgacctcgactatgatatcgacggcgtcgtc
tacaaggtcgaccggctcgacctgcaggcgcgcctcggcttccgctcgcgctcgccgcgc
tgggcgacggcgcacaagtttccggccgagcaggccttcacgcggctcaagggcatcgac
atccaggtcggccgcaccggcgcgctgacgccggtcgcgcggctggagccgatcaccgtc
ggcggcgtggtggtgaccaacgcgaccctgcacaacgaggactacatccgcggtgtcggc
aatagcggcgaaccgattcgcgaagggcgcgacatccgcatcggcgacatggtcatcgtc
cagcgggcaggggacgttatcccgcagatcgtcgacgtggtgatggacgaacgtgccgag
ggcgccgagccctacaaattcccgaccacgtgccctgtctgcggcagtcacgcggtgcgc
gacatcaacgagaaatccggcaaggtcgatgccgtccgccgctgcaccggcggcttcgtc
tgccgcgcgcaagcggtcgaacacctgaagcacttcgtctcgcgcaacgccttcgatatc
gaagggcttggctccaagcagatcgaattcttcttcgaaagcgaagacgacaacctgagg
atccgcacggcaccggagatcttcacgctggagcggcggcaggaagcctcgcttaccaag
ctcgaaaatatcgagggcttcggaaaggtcagcgtccgaaagcttttcgaggcgatcacg
aaccggcgctcgatcgcgctccaccgcttcatctacgcgctcggcatccgccatgtcggc
gagacgacggcgaagctgctcgcgcgctcctatggcagctacgaccactttggcgcggcg
atggtcgaggcgggcagctttgccggcgacgcatggaacgagctcaacagcatcgacggc
atcggtgaggtcgtcgcccgcgccatcgtcgagttctacaaggagccccgcaatgtcgag
gtggtctcgcggcttctggaagaggtgacgccggaaaatgcggagatgccggtcgtggcc
gacagcccggtcgccggcaaaacggtcgtcttcaccggctcgctcgaaaagatgacgcgc
gacgaggcgaaggccaaggccgaaagcctcggtgccaaggtggcgggttcggtctcgaag
aagaccgacatcgtcgtcgccggtccgggcgccggctcgaagctcgacaaggcccgcgag
ctcggcattcagactatggacgaggacgagtggctggcgctgatcggggggtag
DBGET
integrated database retrieval system
