Enterobacter sp. N18-03635: ELK40_16435
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Entry
ELK40_16435 CDS
T08394
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
enb
Enterobacter sp. N18-03635
Pathway
enb03030
DNA replication
enb03410
Base excision repair
enb03420
Nucleotide excision repair
enb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
enb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ELK40_16435 (ligA)
03410 Base excision repair
ELK40_16435 (ligA)
03420 Nucleotide excision repair
ELK40_16435 (ligA)
03430 Mismatch repair
ELK40_16435 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
enb03032
]
ELK40_16435 (ligA)
03400 DNA repair and recombination proteins [BR:
enb03400
]
ELK40_16435 (ligA)
Enzymes [BR:
enb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ELK40_16435 (ligA)
DNA replication proteins [BR:
enb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ELK40_16435 (ligA)
DNA repair and recombination proteins [BR:
enb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ELK40_16435 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ELK40_16435 (ligA)
MMR (mismatch excision repair)
DNA ligase
ELK40_16435 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ELK40_16435 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
DUF2229
Prok-E2_C
DZR_2
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
AZV06641
LinkDB
All DBs
Position
complement(3307169..3309184)
Genome browser
AA seq
671 aa
AA seq
DB search
MDSIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELITPDSPTQ
RVGAEPLGAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSSDSLTWCCELKLDGLA
VSLLYENGVLVRAATRGDGTTGEDITTNVRTIRAIPLRLQGDNIPARLEVRGEVFLPQAG
FEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHL
GRLLQFKAWGLPVSNRVQLCDSPEAVLAFYHKVEEDRPTLGFDIDGVVIKVNSLVLQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVESERPDDTREVVFPTHCPVCGSDVERVEG
EAVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFRLTAG
KLTGLDRMGPKSAQNVVNALEAAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEK
ASIEELQKVPDVGIVVATHVFNFFAEESNRNVIGELLEEGIKWPAPVVVNAEEIDSPFAG
KTVVLTGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVI
DEVEMMRLLGE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggactcaatcgaacaacaactcactgaactgcgaaccacgcttcgccatcatgaatac
ctctatcatgttatggacgcgccggaagtgccggatgcggagtatgaccgcctgatgcgc
gagctgcgcgaactagaggcgcagcatcctgaactcatcacgccggattcccccacccag
cgcgtcggcgctgagccgctgggcgctttcagccaggtgcgtcatgaagtgccgatgctg
tcgctggataacgtcttcgatgaagagagcttcctcgcgtttaacaagcgcgtgcaggat
cgcctgaaaagcagcgactctctcacctggtgctgcgagctgaagctggatggcctggcg
gtcagtcttctctatgaaaacggcgtgctggtgcgtgccgcgacgcgtggcgacggcacg
acgggcgaagacatcaccaccaacgtgcgtaccatccgcgcgatccctctgaggctgcag
ggtgacaacattcctgcacgtctggaagtgcgcggcgaagtgttcctgccgcaggcgggc
ttcgagaaaattaacgaagaggctcgtcgcaccggcgggaaagtgtttgctaacccgcgt
aatgcggcggcgggctcgctgcgccagctcgacccacgtattaccgcgaagcgaccgctt
actttcttctgctacggtgtgggtattcttgagggcggcgagctgccggatacgcacctt
ggacgcctgctgcagtttaaagcgtggggcctgccggtgagcaaccgcgttcagctctgc
gactcgccggaagcggtgctggcgttctaccacaaggttgaagaggaccgtccgacgctc
ggttttgatattgatggcgtcgtcatcaaggtgaattcactggtgctgcaggagcagctg
ggctttgtggcgcgcgcgccgcgctgggcggtggcgtttaagttccctgcccaggagcag
atgaccttcgttcgcgacgtggagttccaggtcggtcgaacgggggctattacaccggtc
gcccgtctggaaccagtgcaggtggcgggcgtgctggtgagtaacgccacgctgcacaac
gccgatgaaatcgaacgcctgggccttcgcattggtgacaaagtggtgattcgccgcgca
ggggacgtgatcccgcaggtggttaacgttgtggagtcagaacgtcctgacgatacgcgc
gaggttgtcttcccaacccattgcccggtgtgcggttctgacgttgagcgtgtggaaggt
gaagcggtggcgcgctgtacgggtggcttaatctgtggcgcgcagcgtaaagagtcactg
aagcacttcgtctcccgtcgcgcaatggacgttgacggcatgggcgacaagattatcgat
cagctggttgagaaagagtacgtccacacgccagcggacctcttcaggttgaccgctggt
aaactgaccggtctggaccgcatgggaccaaagtctgcccagaatgtggttaacgcgctg
gaagccgcaaaagagacgactttcgcccgtttcctctacgcgctgggcattcgtgaagtg
ggtgaagcaaccgcagcaggtctggcagcatactttggtacgctggaggcgctggaaaag
gcgagcatcgaggagctgcagaaagtcccggacgtaggtattgtcgtcgccacgcacgtc
tttaacttcttcgccgaagagagcaaccgtaacgtcatcggcgaactgctggaagagggc
attaaatggcccgcgccggtggtggttaacgctgaagagatcgacagcccgttcgccggt
aaaacggtggtgctgaccggcagcctgagccagctttcacgcgacgatgcaaaagcgcgt
ctggtggcgctgggggcaaaagtggcgggcagcgtgtcgaagaaaaccgacctggtgatc
gccggtgaagcggcgggttcgaagctggcgaaagcccaggagctcggcattgaggttatc
gacgaagtggaaatgatgcgtctgttaggagagtaa
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integrated database retrieval system
