Endozoicomonas sp. GU-1: O2T12_18830
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Entry
O2T12_18830 CDS
T08918
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
eng
Endozoicomonas sp. GU-1
Pathway
eng03030
DNA replication
eng03410
Base excision repair
eng03420
Nucleotide excision repair
eng03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
eng00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
O2T12_18830 (ligA)
03410 Base excision repair
O2T12_18830 (ligA)
03420 Nucleotide excision repair
O2T12_18830 (ligA)
03430 Mismatch repair
O2T12_18830 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
eng03032
]
O2T12_18830 (ligA)
03400 DNA repair and recombination proteins [BR:
eng03400
]
O2T12_18830 (ligA)
Enzymes [BR:
eng01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
O2T12_18830 (ligA)
DNA replication proteins [BR:
eng03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
O2T12_18830 (ligA)
DNA repair and recombination proteins [BR:
eng03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
O2T12_18830 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
O2T12_18830 (ligA)
MMR (mismatch excision repair)
DNA ligase
O2T12_18830 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
O2T12_18830 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
RNA_pol_A_CTD
DUF4796_N
DZR_2
GFRP
Zn_ribbon_RlmA
Motif
Other DBs
NCBI-ProteinID:
WBA80375
LinkDB
All DBs
Position
complement(4560020..4562074)
Genome browser
AA seq
684 aa
AA seq
DB search
MSMTSSDIPSVPSLELAEQEILQLRQQISEHNHRYYVLDEPEIPDSEYDKLFIRLKSLEA
AYPQLITEDSPTRRVGGTPLKAFGQVRHELAMLSLDNAFDAEDQADFNRRVKERLGTTED
IEYACEPKLDGIAVSLLYEDGLLVRAATRGDGTTGEDITQNIRTIESIPLKLMGDGWPRR
LEVRGEVYMPKAGFEQLNRRASAKGEKTFVNPRNAAAGSLRQLDSRITAKRPLTIYCYSV
GVVDGGVLPETHSEILACLKQWGLRVSPELQVVKGVQACEDYYQAMAEKRQGLPYEIDGI
VYKVNAIARQQALGFVARAPRWAIARKFPAQEAITTLKDVEFQVGRTGAITPVARLQPVF
VGGVTVSNATLHNMDEIARLDIKIGDSVVILRAGDVIPKVNRVIHSMRPDDVRDITFPDR
CPVCDSELEREEAILRCSGGLFCSAQRKEAIKHFASRKAMDIDGLGDKLVEQLVDRQLIA
TVADLFSLNAPEVSGLERMGKKSAENLINALDQSRKTTLPRFIYSLGIREVGEATAQGLA
GHYRDLHKLMAASVEDLQTVDDVGPVVAGHIEKFFRQEHNREVIDALLAKGVAWETESPV
VEGGDQPLAGETWVLTGTLNTMTRDEGKAILQKLGAKVTGSVSAKTSALLAGDKAGSKLA
KAEKLGVRVVTEDDFMQMRQAWGE
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgagcatgacttcttcagatatcccatcggttccttcccttgagcttgcagagcaagag
atacttcagctgcgtcagcaaatcagcgagcacaaccatcgttactatgtcctggatgag
ccggaaattcccgacagtgaatacgataagctgtttatccgcctgaaatcccttgaagct
gcatacccacagctgataactgaagattctcccacccggcgggtcggtggcacgcctctg
aaagcgtttggtcaggttcgccatgaactggccatgctctccctggataacgcttttgat
gcggaagatcaggcggactttaatcgtcgggttaaagagcggctgggcaccactgaagac
attgaatacgcctgcgaacccaagctggatggtatcgctgtcagcctgttatacgaagat
ggtcttctggtcagggcagctacccgtggcgatggcactaccggggaagatattacccag
aacattcgtacgattgaatcaatcccactcaagttgatgggcgatggctggcctcgacgc
cttgaagttcggggcgaagtgtatatgccaaaggctggctttgaacagttgaaccggcgg
gccagtgccaaaggtgagaagacctttgttaacccgagaaatgcagcggctggcagtttg
cgccagctggattcgcggataacggctaaacgaccattgacgatctattgctacagtgtt
ggcgttgtcgatggcggggttctgccagagacccacagtgagatacttgcctgtctgaaa
caatggggcctacgagttagccccgaactgcaggtggtcaaaggtgtccaggcctgtgaa
gactactatcaagccatggctgagaaacgtcaggggctgccttacgagattgacggtatt
gtttataaagtgaatgccattgcccggcagcaggctctggggtttgtggcccgggcaccg
cgctgggccatcgcccgtaagttcccggcacaggaagcgatcacgactcttaaggatgtg
gagtttcaggttggcagaaccggtgctatcactccggttgcccgtttgcagccggtgttt
gtgggcggggtgacggtcagtaatgcgaccttgcacaatatggatgaaattgcccggctg
gatatcaaaataggcgacagtgtcgttatcctccgggcgggtgatgttattcccaaggtg
aaccgggttatccactccatgcgtcctgatgatgttcgggatatcacctttcccgatcgc
tgcccggtatgcgactctgagctggaacgtgaagaagccatcctgcgctgttctggcgga
ctgttctgttcagcccagcgcaaagaggctatcaagcactttgcttctcgcaaggcgatg
gatattgatggtcttggggataaactggttgagcagctggttgatcgtcaattgattgca
acggtggcagacctgttcagtctcaatgccccggaggtttccggccttgaacgtatgggg
aaaaagtcggccgagaacttgattaatgcgcttgatcagtccagaaaaaccacgcttccc
cgttttatctactcactgggcattcgcgaagtgggtgaggcaaccgcacaggggctggca
ggtcactaccgtgatttgcataaattgatggccgcttcggtggaagacttacaaaccgtg
gatgatgttggccctgtggttgctggtcatattgagaagtttttccgtcaggaacacaac
cgcgaagtgattgatgcactcctggcgaaaggtgttgcatgggaaacggaatcgccagtt
gtagaagggggcgatcaaccccttgcaggtgaaacctgggtgttaaccgggacattaaac
acaatgacccgcgacgaaggtaaggccatcctgcaaaaactgggtgccaaggtgactggc
tcagtttcagcaaaaacatcagccttgctggccggtgacaaggccggttcaaaactggcc
aaggcagagaagctgggagtgcgtgtcgtcactgaggatgactttatgcagatgaggcag
gcctggggtgagtag
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