Enterococcus sp. CR-Ec1: CXM95_09585
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Entry
CXM95_09585 CDS
T10252
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
eni Enterococcus sp. CR-Ec1
Pathway
eni03030
DNA replication
eni03410
Base excision repair
eni03420
Nucleotide excision repair
eni03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
eni00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CXM95_09585 (ligA)
03410 Base excision repair
CXM95_09585 (ligA)
03420 Nucleotide excision repair
CXM95_09585 (ligA)
03430 Mismatch repair
CXM95_09585 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
eni03032
]
CXM95_09585 (ligA)
03400 DNA repair and recombination proteins [BR:
eni03400
]
CXM95_09585 (ligA)
Enzymes [BR:
eni01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CXM95_09585 (ligA)
DNA replication proteins [BR:
eni03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CXM95_09585 (ligA)
DNA repair and recombination proteins [BR:
eni03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CXM95_09585 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CXM95_09585 (ligA)
MMR (mismatch excision repair)
DNA ligase
CXM95_09585 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CXM95_09585 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
AUJ85685
LinkDB
All DBs
Position
complement(1987151..1989181)
Genome browser
AA seq
676 aa
AA seq
DB search
MDVPSKEIQSRAEELRTQLNQYAYEYYVKDQPSVEDYLYDQLYAELVEIETNYPQLITED
SPTQRVGGIILPGFEKVTHDIPLYSLNDVFDKEGIVAFDARVQKALGKAVDYVCELKIDG
LSISLKYEEGRFVRGATRGDGTVGENITENLKTVKSIPLKLKEPISLEVRGECYMPKASF
LKLNQQREEEGVEVFANPRNAAAGSLRQLDTRIAAQRNLSTFLYTLADFGPIEANDQFSA
LNELDQLGFRTNHERRVCHTIDEVWAYIEEFHDKRSELPYEIDGVVIKVNNFKDQDALGF
TVKAPRWAAAYKFPPEEAETVIETIEWTVGRTGVVTPTAVMTPVRVAGTTVSRASLHNVD
FIKMKDIRIGDSVIIYKAGDIIPEVAKVLEEKRTETSEPFEAPTHCPECGSELIHLDEEV
ALRCINPKCPAQIKEGLSHFVSRNAMNIDGLGPRVLEQMFDKSLVKDVADLYFLTEEQLL
TLDKIKEKSANNLLRAIHQSKENSVERLIFGLGIRHVGAKAARILAEHFGDLRTLSKAKE
EEIISLETIGATIAESVVTYFDNQEVHDLLDELEKAGVNFAYLGLRTDQLEEVESPFKEK
TVVLTGKLSHFTREEAKERIENLGGKVTGSVSKKTDIVVAGEEAGSKLTKAQSLGVTVWD
EAQMVAAIEGSHSAEQ
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggatgtcccttcaaaagaaatccaatcacgagcagaagagctgcgtacgcaattaaat
cagtacgcgtacgaatactatgtaaaagatcaaccttctgttgaagattatctctatgat
cagctgtatgcagaactggttgaaattgaaaccaattatccgcagctaataaccgaagac
tcgcccacccaacgagtaggcggcatcattttacctggctttgaaaaagtcacccatgat
atcccactttatagcctgaacgatgtctttgacaaagaaggaatcgtggcttttgatgct
cgtgttcaaaaagcattggggaaagcggtagattatgtctgcgagttaaagatcgatgga
ttgtcaatttccttgaaatatgaagaagggcgctttgttcggggagcgactcgaggagat
ggtacggtaggtgaaaacattacagaaaacctaaagactgtcaaatcgatcccactgaaa
ttaaaagaaccgatctcgttggaagttcgtggcgaatgctatatgccaaaggcttcgttt
ttgaaattgaatcaacagcgagaagaagaaggggtggaggtttttgccaatccgagaaac
gcagctgctggaagcttacgtcaattagacactcggatcgcagcccaaagaaacttgagc
acctttttatacacacttgctgactttggtccaattgaagctaatgatcaattttcagca
ttgaatgaactggatcaattaggctttcgtacaaatcacgaacgcagagtgtgtcacacc
atcgatgaagtgtgggcatatatcgaagagtttcatgacaagcgcagtgagctcccgtat
gagattgacggcgtagtcatcaaagtcaataattttaaagatcaagatgcgttaggcttt
accgtaaaagcaccccgatgggcggcggcatataagtttccaccggaagaagcggaaaca
gtgatcgaaacgatcgaatggaccgtgggacggacgggtgttgtgacaccgaccgctgtt
atgactcctgttcgtgttgctggaacgacggtcagccgtgctagtctccataatgtagat
ttcattaaaatgaaagacattcgcattggcgattcggtcatcatctataaggcgggggac
attattccagaggttgcgaaagtcttggaagaaaaacgcacggaaacaagtgaacccttt
gaagcgcctacacattgtcccgaatgtgggagtgagctgatccatttagatgaagaagtt
gccttgcgttgtatcaatccgaagtgtccagcgcagattaaagagggcttaagccacttt
gtttcccgaaatgctatgaatattgatggtttagggccacgtgttttagagcaaatgttc
gataaatccttagtcaaagatgtggccgacttgtactttttaacagaagaacaattgctg
accctcgataaaatcaaagagaaatcagctaataaccttttgcgtgccatccatcaaagc
aaagaaaattcagttgagcgcttgattttcgggctaggcatccgtcatgttggtgccaaa
gcggctcggattttagcggaacattttggtgaccttcggacccttagcaaagccaaagaa
gaagagatcatttcgttggaaaccattggtgctacaattgcagaaagtgtcgttacgtat
tttgacaatcaagaagttcacgaccttttagatgaacttgaaaaagcgggtgttaacttt
gcttatctagggctgagaacggatcaattggaagaagtggagtcgccatttaaagagaaa
acagtcgttttgacagggaaattgagtcatttcacccgcgaagaagccaaagaaagaatc
gaaaaccttggtggaaaagtcaccggaagtgtgtcgaaaaagactgatatcgttgttgcc
ggggaagaggctggcagtaaactgaccaaagcccagtccctaggcgttaccgtttgggat
gaagctcaaatggtggctgcgatcgaaggcagtcattcggcagaacaataa
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integrated database retrieval system
