Enterobacter sp. PGRG2: QRD42_10290
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Entry
QRD42_10290 CDS
T11208
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
enj Enterobacter sp. PGRG2
Pathway
enj03030
DNA replication
enj03410
Base excision repair
enj03420
Nucleotide excision repair
enj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
enj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QRD42_10290 (ligA)
03410 Base excision repair
QRD42_10290 (ligA)
03420 Nucleotide excision repair
QRD42_10290 (ligA)
03430 Mismatch repair
QRD42_10290 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
enj03032
]
QRD42_10290 (ligA)
03400 DNA repair and recombination proteins [BR:
enj03400
]
QRD42_10290 (ligA)
Enzymes [BR:
enj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QRD42_10290 (ligA)
DNA replication proteins [BR:
enj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QRD42_10290 (ligA)
DNA repair and recombination proteins [BR:
enj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QRD42_10290 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QRD42_10290 (ligA)
MMR (mismatch excision repair)
DNA ligase
QRD42_10290 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QRD42_10290 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
Nlig-Ia
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
WJD47718
LinkDB
All DBs
Position
2372410..2374428
Genome browser
AA seq
672 aa
AA seq
DB search
MESIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLLRELRELEAQHPDLITPDSPTQ
RVGAAPLSAFTQIRHEVPMLSLENVFDEESFLAFNKRVQDRLKSTDALSYCCELKLDGLA
VSILYENGVLIRAATRGDGTTGEDITTNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAG
FEKINEEARRTGGKIFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPRSHL
ERLQQFKRWGLPVSDRIRICDTPQAVLDFYHKVEEDRPQLGFDIDGVVIKVDSLDLQEQL
GFVARAPRWAVAFKFPAQEQMTWVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHN
ADEIARLGLKIGDKVVIRRAGDVIPQVVNVIESERPANTREVEFPTHCPVCGSDVERVEG
EAVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFRLTAG
KLTGLDRMGPKSAQNIVNALEKSKETTFARFLYALGIREVGEATAAGLAAYFGTLDALIA
ASIDELQKVPDVGIVVATHVRHFLDEESNRDVIRQLVEEVGIHWAAPVVVNAEEIDSPFA
GKTIVLTGSLSQMSRDDAKAALLALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEV
IDEAEMIRLLGA
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaatcgaacaacaactcacagaactgcgaaccacgcttcgccatcatgaatac
ctgtatcacgtgatggacgcgccggaagtgcccgatgctgaatacgatcggctgttgcgt
gaactgcgtgaactggaagcgcagcatcccgacctgatcacccccgactcgccaacccag
cgcgtgggcgccgcacctttaagcgcctttacccagatccgccacgaagtgcccatgctg
tcgctggaaaacgtctttgatgaagagagctttctggcttttaacaaacgcgtgcaggat
cgactgaaaagcacagacgcgctgagctattgctgcgaactgaagctggacggccttgcg
gtgagtattctttatgagaacggtgtgctgatccgcgctgccacacgcggcgacggcacg
accggtgaagacatcaccaccaacgtacgcaccatccgcgccattcctctgaagctgcac
ggtgacaatattccggcgcgcctcgaagtgcgcggcgaagtgttcctcccgcaggcggga
tttgagaagatcaacgaggaagcccggcgcactggcggtaaaatttttgccaacccgcgt
aacgccgccgcgggctcgctgcgccagcttgatccgcgcatcaccgccaaacgcccgtta
accttcttctgctacggcgtcggtattctggaaggcggcgaactaccgcgcagccatctt
gaacggttacagcagttcaaacgctggggactgccggtcagcgaccgtatccgcatttgc
gacacgccgcaggcggtgctggatttttatcacaaggtcgaagaagaccgcccgcagctg
ggtttcgatattgacggcgtggtgatcaaggtggactcgctggatctccaggagcagctg
ggctttgtcgcccgtgcgccgcgctgggcggtggcctttaaattcccggcccaggagcag
atgacctgggtgcgcgatgttgaattccaggtggggcgtaccggtgccatcacgccggtg
gcgcgtctggagccggtgcatgtcgcgggggtgctggtcagtaacgccacgctgcataac
gccgatgaaattgcccgcctggggctgaaaatcggcgataaagtggtgatccgccgcgcc
ggggatgttatcccgcaggtggtgaacgtcattgagtcggagcgtccggcgaatacccgc
gaagtagaattcccgacccattgcccggtctgcggctcggatgtggagcgcgtagaaggc
gaagcggtaacccgctgtaccggcggcctgatctgcggcgcgcagcgtaaagaatctctt
aagcactttgtctcgcgccgtgccatggatgtcgacggcatgggcgataaaattatcgac
cagctggtggagaaagagtacgtccatacgccagcggatctgttcagactcaccgccggg
aaactcaccgggctggatcgcatggggccgaaatccgcgcagaatatcgttaacgcgctg
gaaaaatcgaaagagaccacctttgcccgtttcctgtacgcgctgggcattcgtgaagtg
ggtgaagccaccgccgccgggctggcagcctatttcggcacgctggacgcgctgattgcc
gcctccatcgacgaactgcaaaaagtgccggacgtcggcattgtggtcgccacccatgtg
cgtcactttctggatgaagagagcaatagggacgtgatccgccaactggtggaagaagtg
gggatccactgggcggcgcctgtggtggtcaacgccgaagaaatcgacagtccgttcgcc
ggtaaaaccatcgtgctgaccggcagcctgagccagatgtcacgtgatgatgccaaagcg
gcgctgctggcgctgggggcgaaggttgcgggcagcgtgtcgaagaaaaccgatctggtg
atcgcaggcgaagccgccggatcgaagctggcgaaggcgcaggagctggggatagaggtg
atcgacgaggcggagatgatccgtttattgggtgcgtga
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integrated database retrieval system
