Enterobacter cloacae subsp. dissolvens SDM: A3UG_16450
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Entry
A3UG_16450 CDS
T02159
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
enl
Enterobacter cloacae subsp. dissolvens SDM
Pathway
enl03030
DNA replication
enl03410
Base excision repair
enl03420
Nucleotide excision repair
enl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
enl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A3UG_16450 (ligA)
03410 Base excision repair
A3UG_16450 (ligA)
03420 Nucleotide excision repair
A3UG_16450 (ligA)
03430 Mismatch repair
A3UG_16450 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
enl03032
]
A3UG_16450 (ligA)
03400 DNA repair and recombination proteins [BR:
enl03400
]
A3UG_16450 (ligA)
Enzymes [BR:
enl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A3UG_16450 (ligA)
DNA replication proteins [BR:
enl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A3UG_16450 (ligA)
DNA repair and recombination proteins [BR:
enl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A3UG_16450 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A3UG_16450 (ligA)
MMR (mismatch excision repair)
DNA ligase
A3UG_16450 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A3UG_16450 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
RNA_ligase
DUF2229
Prok-E2_C
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
AFM61014
LinkDB
All DBs
Position
complement(3541455..3543470)
Genome browser
AA seq
671 aa
AA seq
DB search
MDSIEQQITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRDLETQHPELITPDSPTQ
RVGAEPLGAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSSDALTWCCELKLDGLA
VSILYENGVLVRAATRGDGTTGEDITTNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAG
FEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGALPDTHL
GRLLQFKAWGLPVSNRVQLCDSPEAVLAFYHKVEEDRPTLGFDIDGVVIKVNSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVQSERPDDTRAIEFPTHCPVCGSDVERVEG
EAVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAG
KLTGLDRMGPKSAQNVVNALEAAKETTFARFLYALGIREVGEATAAGLAAYFGTLDALEK
ASIEELQKVPDVGIVVATHVFNFFAEESNRDVIGKLLEQGIKWPAPVVVNAEEIDSPFAG
KTVVLTGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVI
DEAEMLRLLGE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggactcaatcgaacaacaaatcactgaactgcgaaccacgcttcgccatcatgaatat
ctttatcatgttatggacgcaccggaagtgccggatgcggagtacgatcgcctgatgcgt
gaactgcgcgatttagagacgcaacacccggagttgatcactccagactcgccaacccag
cgtgtcggcgctgaaccgctaggtgcgttcagtcaggtacgtcatgaagtgccgatgctc
tctctggataacgtcttcgatgaagagagcttcctcgcctttaacaagcgtgtgcaggat
cggctcaaaagcagcgacgccctgacatggtgctgtgagctgaagctggatggcctggcc
gtcagtatcctctacgagaacggcgtgctggtccgtgccgcaacgcgtggtgatggcact
accggcgaagacatcaccaccaacgtgcgtactatccgtgcgatcccgctgaagctgcat
ggcgacaatattccagctcgtctggaagtccgcggtgaagtgttcctcccgcaggcgggc
ttcgaaaaaattaacgaagaggcacgtcgcaccggtgggaaggtgtttgctaacccgcgc
aatgcggcggcaggctctttgcgccagctggacccgcgtattaccgcgaagcgaccactt
actttcttctgctatggcgtcggtattctggagggaggggcgctgccggatacccacctc
ggacgtttactgcagtttaaagcgtggggcttgccggtcagcaatcgcgtgcagctttgc
gactcaccggaggcggtgcttgcgttctatcacaaggttgaagaagaccgtccgaccctc
ggttttgatatcgatggtgtggttatcaaggtgaactcgcttgcgctgcaggaacagcta
ggctttgtggcacgagcaccgcgctgggctgtggcgtttaagttcccggcccaggagcag
atgacctttgtccgcgatgtggagttccaggtgggccgtacgggagccatcacgcccgtt
gcacgtctggagccggtgcatgtggccggtgtgctggtgagcaatgcaaccctgcacaac
gcggatgaaattgagcgtcttggcctgcgtattggtgacaaagtggtgattcgccgggcg
ggggatgtgatcccgcaggttgtcaacgtggttcagtctgaacgccctgacgatacgcgc
gccattgagttcccgacacattgcccggtgtgtggctcagacgtggagcgtgtggaaggt
gaagcggtggcccgttgcactgggggattaatctgtggcgcgcagcgtaaagagtcactc
aagcacttcgtctcccgacgggcgatggacgttgacggcatgggcgacaaaattatcgat
cagctggttgagaaagagtacgtccacacgcctgcggatctctttaaactgacggcaggt
aagctgaccggccttgaccgcatgggaccgaagtcggctcagaacgtggtgaatgcgctg
gaagccgccaaagagaccacgtttgcccgtttcctctatgcgcttggtattcgtgaggtc
ggtgaagccaccgctgcaggtctggcggcgtactttggtacgctggacgcgctggagaaa
gcgagcattgaggagctgcaaaaagtgccggatgtaggcattgtggtggccacgcacgtc
tttaacttctttgccgaagagagcaaccgcgacgtcatcggcaaactgctggaacagggc
atcaaatggcctgcgccggtcgttgtcaacgccgaagagatcgacagcccgttcgcgggt
aaaacggtggtgctaaccggtagtctcagccagctgtcacgtgatgatgcgaaagcgcgt
ctggtggcgctgggggcaaaagtggcgggcagcgtgtcgaagaaaaccgacctggtgatt
gccggtgaagccgctggttcaaagctggccaaagcgcaggagctcggcattgaggttatc
gatgaagcagaaatgctgcgcctgttaggagagtaa
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