Enterobacter sp. SES19: GXP72_16515
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Entry
GXP72_16515 CDS
T11023
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ente Enterobacter sp. SES19
Pathway
ente03030
DNA replication
ente03410
Base excision repair
ente03420
Nucleotide excision repair
ente03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ente00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GXP72_16515 (ligA)
03410 Base excision repair
GXP72_16515 (ligA)
03420 Nucleotide excision repair
GXP72_16515 (ligA)
03430 Mismatch repair
GXP72_16515 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ente03032
]
GXP72_16515 (ligA)
03400 DNA repair and recombination proteins [BR:
ente03400
]
GXP72_16515 (ligA)
Enzymes [BR:
ente01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GXP72_16515 (ligA)
DNA replication proteins [BR:
ente03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GXP72_16515 (ligA)
DNA repair and recombination proteins [BR:
ente03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GXP72_16515 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GXP72_16515 (ligA)
MMR (mismatch excision repair)
DNA ligase
GXP72_16515 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GXP72_16515 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
DUF2229
Prok-E2_C
DZR_2
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QIR23935
LinkDB
All DBs
Position
complement(3470720..3472735)
Genome browser
AA seq
671 aa
AA seq
DB search
MDSIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELITPDSPTQ
RVGAEPLGAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSSDALTWCCELKLDGLA
VSLLYENGVLVRAATRGDGTTGEDITTNVRTIRAIPLKLQGDNIPARLEVRGEVFLPQAG
FEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHL
GRLLQFKAWGLPVSNRVQLCDSPEAVLAFYHKVEEDRPTLGFDIDGVVIKVNSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVESERPDDTREIVFPTHCPVCGSDVERVEG
EAVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAG
KLTGLDRMGPKSAQNVVNALEAAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEK
ASIEELQKVPDVGIVVATHVFNFFAEESNREVIGKLLEEGIRWPAPVVVNAEEIDSPFAG
KTVVLTGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVI
DEAEMMRLLGE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggactcaatcgaacaacaactcactgaactgcgaaccacgcttcgccatcatgaatat
ctctatcatgttatggacgcaccggaagttccggatgcggagtatgaccgcctgatgcgc
gagctgcgcgaattagaggcgcagcatccagaactcatcacgccggattcccccacccag
cgcgtcggcgcagagccgctgggggccttcagccaggtgagacatgaagtgccgatgctg
tcgctggataacgtcttcgatgaagagagcttcctcgcgtttaacaagcgcgtgcaggat
cgcctgaaaagcagcgacgcgctcacctggtgctgcgagctgaagctggatggcctggcc
gtcagccttctctatgaaaacggcgtgctggtgcgtgccgcgacgcgtggcgacggcacg
acgggtgaagacatcaccactaacgtgcgtaccatccgcgcgatcccgctgaagcttcag
ggtgacaacattcctgcgcgtctggaagtgcgcggcgaagtgttcctgccccaggcgggc
ttcgagaaaattaacgaagaggcgcgtcgcaccggtgggaaggtgtttgctaacccgcgt
aatgcggcggcgggctctctgcgccagcttgacccgcgtatcaccgcgaagcgaccgctt
actttcttctgctacggcgtcggtattctggagggcggcgagctgccggatacccatctc
gggcgtctgctgcagtttaaagcgtggggcctcccggtgagcaaccgcgttcagctctgc
gactcgccggaagcggtactggcgttctaccacaaagtggaagaggaccgtccgacgctc
gggtttgatattgatggcgtggtcatcaaggtgaactcactggcgctgcaggagcagctg
ggctttgtggcgcgcgcgccgcgctgggcggtggcgtttaagttcccggctcaggagcag
atgaccttcgtccgcgacgtggagttccaggtcggccgtacgggcgccattaccccggtt
gcccgtctggagcctgtgcaggttgcgggcgtgctggtgagtaatgccacgctgcataac
gccgatgaaatcgaacgcctgggcctgcgcattggtgacaaagtggtgattcgccgcgcg
ggggacgtgatcccgcaggtggttaacgtcgtggagtcagaacgtcctgatgatacgcgc
gagattgtcttcccgacccattgcccggtgtgcggatctgacgtagagcgtgtggaaggt
gaagcggtggcgcgctgcacggggggcttaatctgtggcgcacagcgtaaagagtcactg
aagcacttcgtctcccgtcgggcgatggacgtcgacggcatgggcgataaaattatcgat
cagctggttgagaaagagtatgtccacacgccagcggatctcttcaaactgacggcgggc
aaactgactggtctggaccgcatggggccgaagtcagcccagaacgtggttaacgcgctg
gaagccgccaaagagaccaccttcgcccgtttcctgtacgcgctgggcattcgtgaagtg
ggtgaagcaaccgcagcaggtctggcagcatactttggtacgctggaggcgctggaaaag
gcgagcatcgaggagctgcagaaagttccggatgtcggcatcgttgtcgccacgcacgtc
tttaacttcttcgccgaagagagcaaccgcgaagtcatcggcaaactgctggaagagggc
atcaggtggcctgcaccggtagtggtcaacgccgaagagatcgacagcccgttcgccggt
aaaacggtggtgctgaccggcagcctgagccagctttcacgcgacgatgcaaaagcgcgt
ctggtggcgctgggggcaaaagtggcgggcagcgtgtcgaagaaaaccgacctggtgatc
gccggggaagcggcgggttcgaagctggcgaaagcccaggagctcggcattgaggttatc
gacgaagcggaaatgatgcgtctgttaggagagtaa
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integrated database retrieval system
