Sinorhizobium numidicum: PYH37_004633
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Entry
PYH37_004633 CDS
T09000
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
enu
Sinorhizobium numidicum
Pathway
enu03030
DNA replication
enu03410
Base excision repair
enu03420
Nucleotide excision repair
enu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
enu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PYH37_004633 (ligA)
03410 Base excision repair
PYH37_004633 (ligA)
03420 Nucleotide excision repair
PYH37_004633 (ligA)
03430 Mismatch repair
PYH37_004633 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
enu03032
]
PYH37_004633 (ligA)
03400 DNA repair and recombination proteins [BR:
enu03400
]
PYH37_004633 (ligA)
Enzymes [BR:
enu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PYH37_004633 (ligA)
DNA replication proteins [BR:
enu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PYH37_004633 (ligA)
DNA repair and recombination proteins [BR:
enu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PYH37_004633 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PYH37_004633 (ligA)
MMR (mismatch excision repair)
DNA ligase
PYH37_004633 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PYH37_004633 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
WEX76335
LinkDB
All DBs
Position
1:complement(2482132..2484285)
Genome browser
AA seq
717 aa
AA seq
DB search
MLNEKKPVEQLTESEAAEELAFLASELARHDALYHGQDAPEISDADYDALKRRNDLIEAR
FPALIREDSPSRKVGAAPSLTFQPVVHARPMLSLDNTFSDEDARDFLAGIYRFLGRLPDH
SIAFTAEPKIDGLSMSLRYENRRLVTAATRGDGTTGENVTANVRTIRMIPQTLPADAPDI
VEVRGEIYMAKSDFAALNAEMAAQGRPLYVNPRNTASGSLRQLDPRVTASRKLRFFAYAW
GQMSAMPADTQFGMVEAFRAWGFPVSPLMRRLSSADELLEHYHHIERERPDLDYDIDGVV
YKVDRLDLQARLGFRSRSPRWATAHKFPAEKAFTRLKGIDIQVGRTGALTPVARLEPITV
GGVVVTNATLHNEDYIRGVGNNGEPIREGRDIRIGDMVIVQRAGDVIPQIVDVVLDERPE
GAEPYSFPKTCPVCGSHAVRDINEKTGKVDAVRRCTGGFVCRAQAVEHLKHFVSRYAFDI
EGLGAKQIEYFFESEDPALSIRTAPDIFTLERRQETSITKLENIEGFGKVSVRKLYDAIN
TRRSIALHRFIYALGIRHVGETTAKLLARSYGNYAAFSEAMTEAARFSGEAWAELNSIEG
IGEVVARAIIEFYKEPRNIEVVSRLLEEVTPESTEMPVATDSPVAGKTVVFTGSLEKMTR
DEAKAKAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKAREFGIQTMDEDEWLALIGG
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgctgaacgagaaaaaacccgtcgaacaactgaccgaatcggaagcggccgaggagctc
gccttccttgcatcggagcttgcccggcacgatgcgctctaccacggccaggatgcaccc
gagatttcggacgcggattacgacgcgttgaagcggcgcaacgatctgatcgaggcgcgc
tttccggctctcatccgcgaggacagcccctcgcgcaaggtgggtgcggcgccgtcgctc
acctttcaaccggtcgttcatgcgcggccgatgctctcgctcgacaacaccttttccgac
gaggacgcccgcgatttcctcgccggcatctaccgttttctgggacggcttccggatcat
tcgatcgcttttaccgccgagccgaagatcgatggactttcgatgtcgttgcgctacgag
aaccgccggctggtgacggcggcgacgcgcggcgacggcacgaccggcgaaaacgtcacc
gccaatgtccgcacgattcgcatgatcccgcagacgcttccggccgatgcgcccgacatc
gtcgaagtgcgcggcgaaatctacatggcgaaatccgatttcgccgccctcaatgccgag
atggcagcgcagggaagaccgctttacgtcaacccgcgcaataccgcttccggctcgctc
aggcagctcgatcccagggttacggcaagccgcaagctccggttcttcgcctatgcctgg
ggccagatgtcggcgatgccagccgatacgcagttcggcatggtcgaggccttcagagcg
tggggctttccggtcagtccgctgatgcggcgcctttcctctgccgacgaactgctggag
cattatcaccatatcgagcgcgaacggccggatctcgattacgacatcgatggcgtcgtc
tacaaggtggaccgactcgacctgcaggcgcggctcggcttccgctcgcgctcgccgcgc
tgggcgacggcccacaagttcccggccgagaaggcttttacgcggctcaagggcatcgat
attcaggtcggccgcaccggcgcgttgacgccggtcgcgcgacttgaaccgatcaccgtc
ggcggcgtggttgtcaccaatgcgaccctgcataacgaggattacatccgcggcgtcggc
aacaacggcgagccgatccgcgagggacgcgacatccgcatcggcgacatggtcatcgtc
cagcgggcaggggacgtcatcccccagatcgtcgatgtggtgcttgacgagcggccggaa
ggcgcggagccctacagtttcccgaagacatgcccggtctgcggcagccatgccgtgcgc
gacatcaacgagaagaccggcaaggtcgatgcagtgcggcgttgcactggcgggttcgtc
tgccgggcgcaggcggtcgagcacctgaaacattttgtctcgcgctatgccttcgatatc
gaagggctcggtgccaagcagatcgagtacttcttcgaaagcgaagacccggcgctatcg
atccgcaccgcgcctgacatcttcacgctggagcgccggcaggagacctcgattaccaag
ctcgaaaacatcgaaggtttcggcaaggtcagcgtcagaaagctttacgacgcgatcaat
acgcggcgctccatcgcgcttcaccgtttcatctatgcgctcggcatccgccacgtgggc
gagacgacggccaagctgcttgcgcggtcctacggcaactacgcagctttcagcgaagcg
atgacggaggctgcgcgtttttcaggcgaggcctgggccgagctcaacagcatcgagggc
atcggcgaggtcgtcgcccgcgccatcatcgaattctataaggagccgcgcaacatcgag
gttgtctcgcggctgcttgaagaggtgacgccggaaagtacagaaatgccggttgcgacc
gacagccccgtcgccggcaagacggtggtgttcaccggctcgctggagaagatgacgcgt
gacgaggccaaggccaaggcggaaagccttggggccaaggtcgccggctcggtgtcgaag
aaaaccgacatcgtcgtcgccggtccgggcgccggctcgaagctcgacaaggcccgcgag
ttcggtattcagacgatggacgaggacgaatggctggcgctgatcggcggataa
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