Endozoicomonas sp. SCSIO W0465: MJO57_10860
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Entry
MJO57_10860 CDS
T08210
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
enw
Endozoicomonas sp. SCSIO W0465
Pathway
enw03030
DNA replication
enw03410
Base excision repair
enw03420
Nucleotide excision repair
enw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
enw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MJO57_10860 (ligA)
03410 Base excision repair
MJO57_10860 (ligA)
03420 Nucleotide excision repair
MJO57_10860 (ligA)
03430 Mismatch repair
MJO57_10860 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
enw03032
]
MJO57_10860 (ligA)
03400 DNA repair and recombination proteins [BR:
enw03400
]
MJO57_10860 (ligA)
Enzymes [BR:
enw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MJO57_10860 (ligA)
DNA replication proteins [BR:
enw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MJO57_10860 (ligA)
DNA repair and recombination proteins [BR:
enw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MJO57_10860 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MJO57_10860 (ligA)
MMR (mismatch excision repair)
DNA ligase
MJO57_10860 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MJO57_10860 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
RNA_pol_A_CTD
Rad50_zn_hook
RlmA_N
Motif
Other DBs
NCBI-ProteinID:
USE38617
LinkDB
All DBs
Position
2521431..2523488
Genome browser
AA seq
685 aa
AA seq
DB search
MSMTSSSDIPPVLSLELAEQEIPLLRQQINEHNYRYYVLDEPEIPDSEYDKLFIRLQSLE
SEYPQLITEDSPTQRVGGTPLKAFGQVRHELAMLSLENAFDEEDQADFNRRVKERLGIAE
DVEYACEPKLDGIAVSLLYEGGLLVRAATRGDGTTGEDITQNIRTIESIPLKLIGDDWPQ
RLEVRGEVYMPKAGFAQLNRRASAKGEKIFVNPRNAAAGSLRQLDARITAKRPLTIYCYS
AGVVDGGVLPDTHGEILACLKKWGLRVNPELQVVKGVQACEDYYQAMAEKRERLPYEIDG
IVYKVNSIALQQALGFVARAPRWAVARKFPAQEAITTLKDVEFQVGRTGAITPVARLQPV
FVGGVTVSNATLHNMDEIERLDIKIGDSVVILRAGDVIPKVDRVIHSMRPDDARDITFPD
CCPVCDSELEREEAILRCSGGLFCSAQRKEAIKHFASRKAMDIDGLGDKLVEQLVNRKLI
ATVADLFSLSAPEVSSLERMGRKSAENLINALDQSRRTTFPRFIYSLGIREVGEATALGL
ASHYRDLNKLMAASLDDLQTVDDVGPVVAGHIEKFFRQEHNREVIDALLANGVEWETELL
VEEEGDQPLAGETWVLTGTLSAMTRDEGKAILQKLGAKVTGSVSAKTSALLAGEKAGSKM
AKAEKLGVRIVTEDDFMQMRQTWGV
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgagcatgacgtcttcttcagatattccacccgttctttcccttgagcttgcagagcaa
gagatccctctgttgcgtcagcagatcaatgagcacaactatcgctattatgttctggat
gagccggaaattccggacagtgaatacgataaactgtttatccgcctgcaatcactggaa
tctgaatatccacagctgattactgaagactcgcctacccaacgggtcggcggaacgcct
ttgaaagcgtttggccaggttcgccatgaactggccatgctctctctggagaatgctttt
gacgaagaagatcaggcggactttaatcgccgggttaaagagcgactgggcatcgctgag
gatgttgaatacgcctgtgagccaaagctggacggtattgctgtcagcctgttatacgaa
ggtggccttctggtcagggcggctacccggggtgatggcactaccggcgaagatattacc
cagaatatccgtaccattgagtcaatcccacttaaattgataggagacgactggccgcaa
cggcttgaggtccggggcgaggtgtatatgccgaaggctggctttgcgcagttaaaccgg
cgggccagtgccaaaggtgagaaaatatttgtaaacccgagaaatgcggcggctggcagt
ctacgtcaattggatgcacgcataacggctaaacgaccattaacaatctattgctatagc
gcaggtgttgtggatggcggagtgctgccagatacacacggtgaaattcttgcttgcttg
aaaaaatgggggttacgagtcaatcctgaattgcaggttgtcaaaggtgttcaggcctgt
gaagactactatcaagccatggctgagaaacgtgagaggcttccttacgagattgacggt
attgtttataaagtgaattccattgccctgcagcaggctctggggtttgttgcccgggca
cctcgctgggccgttgcccggaagttcccggcacaggaagcgattactacgcttaaggat
gtggagtttcaggtaggaagaaccggcgccattactccggtagctcgtttgcagccggtg
tttgttgggggagtcaccgtcagtaatgcaaccctgcacaatatggatgaaattgaacgt
cttgatatcaaaataggggatagtgttgtgatcctccgcgctggtgacgtgatccccaag
gtggatcgggttattcactccatgcgccctgatgatgcccgggatatcacgtttcctgat
tgctgtcctgtgtgtgattctgagctggaacgggaagaagccatcttgcgctgctctggc
ggactgttttgttcagcacagcgcaaagaagccattaagcactttgcctcccgcaaggca
atggatattgatggtcttggggataaactggttgaacagctagtcaatcgcaaattgata
gcaacggttgcagatcttttcagtctttctgccccggaagtttcaagcctggagcgtatg
gggagaaagtccgctgagaacctgattaatgcgcttgatcagtccagaagaaccacgttt
ccccgtttcatctactcactgggtattcgggaagtgggtgaggcaacggcattggggctg
gcaagtcactaccgtgatctgaacaaattaatggccgcttcgctggacgacttgcaaacc
gttgatgatgttggcccagtggtagctggtcatattgagaagtttttccgacaggaacac
aaccgcgaagtgatcgatgcacttctggcgaatggtgtggaatgggaaactgaattactg
gttgaagaagaaggagatcaaccgcttgccggtgaaacctgggtgttgaccgggacctta
agcgcaatgacccgcgacgaaggtaaagccatcctgcaaaaactgggggccaaggtgacc
ggctccgtttcagcaaaaacatcagcattgctggccggtgaaaaggcaggttccaaaatg
gctaaagcggagaaactgggagtgcgtatcgtcactgaagatgattttatgcagatgagg
cagacctggggcgtgtag
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