KEGG   Endozoicomonas sp. SCSIO W0465: MJO57_10860
Entry
MJO57_10860       CDS       T08210                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
enw  Endozoicomonas sp. SCSIO W0465
Pathway
enw03030  DNA replication
enw03410  Base excision repair
enw03420  Nucleotide excision repair
enw03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:enw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MJO57_10860 (ligA)
   03410 Base excision repair
    MJO57_10860 (ligA)
   03420 Nucleotide excision repair
    MJO57_10860 (ligA)
   03430 Mismatch repair
    MJO57_10860 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:enw03032]
    MJO57_10860 (ligA)
   03400 DNA repair and recombination proteins [BR:enw03400]
    MJO57_10860 (ligA)
Enzymes [BR:enw01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     MJO57_10860 (ligA)
DNA replication proteins [BR:enw03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     MJO57_10860 (ligA)
DNA repair and recombination proteins [BR:enw03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     MJO57_10860 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     MJO57_10860 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     MJO57_10860 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      MJO57_10860 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD PTCB-BRCT HHH RNA_pol_A_CTD Rad50_zn_hook RlmA_N
Other DBs
NCBI-ProteinID: USE38617
LinkDB
Position
2521431..2523488
AA seq 685 aa
MSMTSSSDIPPVLSLELAEQEIPLLRQQINEHNYRYYVLDEPEIPDSEYDKLFIRLQSLE
SEYPQLITEDSPTQRVGGTPLKAFGQVRHELAMLSLENAFDEEDQADFNRRVKERLGIAE
DVEYACEPKLDGIAVSLLYEGGLLVRAATRGDGTTGEDITQNIRTIESIPLKLIGDDWPQ
RLEVRGEVYMPKAGFAQLNRRASAKGEKIFVNPRNAAAGSLRQLDARITAKRPLTIYCYS
AGVVDGGVLPDTHGEILACLKKWGLRVNPELQVVKGVQACEDYYQAMAEKRERLPYEIDG
IVYKVNSIALQQALGFVARAPRWAVARKFPAQEAITTLKDVEFQVGRTGAITPVARLQPV
FVGGVTVSNATLHNMDEIERLDIKIGDSVVILRAGDVIPKVDRVIHSMRPDDARDITFPD
CCPVCDSELEREEAILRCSGGLFCSAQRKEAIKHFASRKAMDIDGLGDKLVEQLVNRKLI
ATVADLFSLSAPEVSSLERMGRKSAENLINALDQSRRTTFPRFIYSLGIREVGEATALGL
ASHYRDLNKLMAASLDDLQTVDDVGPVVAGHIEKFFRQEHNREVIDALLANGVEWETELL
VEEEGDQPLAGETWVLTGTLSAMTRDEGKAILQKLGAKVTGSVSAKTSALLAGEKAGSKM
AKAEKLGVRIVTEDDFMQMRQTWGV
NT seq 2058 nt   +upstreamnt  +downstreamnt
atgagcatgacgtcttcttcagatattccacccgttctttcccttgagcttgcagagcaa
gagatccctctgttgcgtcagcagatcaatgagcacaactatcgctattatgttctggat
gagccggaaattccggacagtgaatacgataaactgtttatccgcctgcaatcactggaa
tctgaatatccacagctgattactgaagactcgcctacccaacgggtcggcggaacgcct
ttgaaagcgtttggccaggttcgccatgaactggccatgctctctctggagaatgctttt
gacgaagaagatcaggcggactttaatcgccgggttaaagagcgactgggcatcgctgag
gatgttgaatacgcctgtgagccaaagctggacggtattgctgtcagcctgttatacgaa
ggtggccttctggtcagggcggctacccggggtgatggcactaccggcgaagatattacc
cagaatatccgtaccattgagtcaatcccacttaaattgataggagacgactggccgcaa
cggcttgaggtccggggcgaggtgtatatgccgaaggctggctttgcgcagttaaaccgg
cgggccagtgccaaaggtgagaaaatatttgtaaacccgagaaatgcggcggctggcagt
ctacgtcaattggatgcacgcataacggctaaacgaccattaacaatctattgctatagc
gcaggtgttgtggatggcggagtgctgccagatacacacggtgaaattcttgcttgcttg
aaaaaatgggggttacgagtcaatcctgaattgcaggttgtcaaaggtgttcaggcctgt
gaagactactatcaagccatggctgagaaacgtgagaggcttccttacgagattgacggt
attgtttataaagtgaattccattgccctgcagcaggctctggggtttgttgcccgggca
cctcgctgggccgttgcccggaagttcccggcacaggaagcgattactacgcttaaggat
gtggagtttcaggtaggaagaaccggcgccattactccggtagctcgtttgcagccggtg
tttgttgggggagtcaccgtcagtaatgcaaccctgcacaatatggatgaaattgaacgt
cttgatatcaaaataggggatagtgttgtgatcctccgcgctggtgacgtgatccccaag
gtggatcgggttattcactccatgcgccctgatgatgcccgggatatcacgtttcctgat
tgctgtcctgtgtgtgattctgagctggaacgggaagaagccatcttgcgctgctctggc
ggactgttttgttcagcacagcgcaaagaagccattaagcactttgcctcccgcaaggca
atggatattgatggtcttggggataaactggttgaacagctagtcaatcgcaaattgata
gcaacggttgcagatcttttcagtctttctgccccggaagtttcaagcctggagcgtatg
gggagaaagtccgctgagaacctgattaatgcgcttgatcagtccagaagaaccacgttt
ccccgtttcatctactcactgggtattcgggaagtgggtgaggcaacggcattggggctg
gcaagtcactaccgtgatctgaacaaattaatggccgcttcgctggacgacttgcaaacc
gttgatgatgttggcccagtggtagctggtcatattgagaagtttttccgacaggaacac
aaccgcgaagtgatcgatgcacttctggcgaatggtgtggaatgggaaactgaattactg
gttgaagaagaaggagatcaaccgcttgccggtgaaacctgggtgttgaccgggacctta
agcgcaatgacccgcgacgaaggtaaagccatcctgcaaaaactgggggccaaggtgacc
ggctccgtttcagcaaaaacatcagcattgctggccggtgaaaaggcaggttccaaaatg
gctaaagcggagaaactgggagtgcgtatcgtcactgaagatgattttatgcagatgagg
cagacctggggcgtgtag

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