Enterobacter sp. E20: NI40_016045
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Entry
NI40_016045 CDS
T04118
Symbol
ligA
Name
(GenBank) aromatic ring-opening dioxygenase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
enx
Enterobacter sp. E20
Pathway
enx03030
DNA replication
enx03410
Base excision repair
enx03420
Nucleotide excision repair
enx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
enx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NI40_016045 (ligA)
03410 Base excision repair
NI40_016045 (ligA)
03420 Nucleotide excision repair
NI40_016045 (ligA)
03430 Mismatch repair
NI40_016045 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
enx03032
]
NI40_016045 (ligA)
03400 DNA repair and recombination proteins [BR:
enx03400
]
NI40_016045 (ligA)
Enzymes [BR:
enx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NI40_016045 (ligA)
DNA replication proteins [BR:
enx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NI40_016045 (ligA)
DNA repair and recombination proteins [BR:
enx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NI40_016045 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NI40_016045 (ligA)
MMR (mismatch excision repair)
DNA ligase
NI40_016045 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NI40_016045 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
Prok-E2_C
DZR_2
DUF2229
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
ALL18603
LinkDB
All DBs
Position
complement(3447081..3449096)
Genome browser
AA seq
671 aa
AA seq
DB search
MDSIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELITPDSPTQ
RVGAEPLGAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSSDSLTWCCELKLDGLA
VSLLYENGVLVRAATRGDGTTGEDITTNVRTIRAIPLKLQGDNIPARLEVRGEVFLPQAG
FEKINDEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHL
GRLLQFKAWGLPVSNRVQLCDSPEAVLAFYHKVEEDRPTLGFDIDGVVIKVNSLALQEQL
GFVARAPRWAVAFKFPAQEQMTVVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVESERPADTREIVFPTHCPVCGSDVERVEG
EAVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFRLTAG
KLTGLDRMGPKSAQNVVNALEAAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEK
ASIDELQKVPDVGIVVATHVFNFFAEESNREVIGKLLEEGIRWPAPVVVNAEEIDSPFAG
KTVVLTGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVI
DEAEMMRLLGE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggactcaatcgaacaacaactcactgaactgcgaaccacgcttcgccatcatgaatac
ctctatcatgttatggacgcgccggaagtcccggatgccgaatatgaccgcctgatgcgc
gagctgcgcgaattagaggcgcagcatccggagcttatcacgccggattcccctacccag
cgcgtcggcgctgagccgctaggcgctttcagccaggtgcgccatgaggtgccgatgctg
tcgctggataacgtcttcgatgaagagagcttcctcgcgtttaacaagcgcgtgcaggat
cgcctgaaaagcagcgactccctcacctggtgctgcgagctcaagctggatggcctggcg
gtcagtcttctctatgaaaacggcgtgctggtgcgtgccgcaacgcgtggcgacggtacg
acgggcgaagacatcaccaccaacgtgcgtaccatccgcgcgatcccgctgaagctgcag
ggtgacaacattcccgcgcgtctggaagtgcgcggcgaggtgttcctgccccaggcgggc
ttcgagaaaattaacgacgaggcgcgtcgcaccggcgggaaggtgtttgctaacccgcgt
aatgcggcggcaggctctctgcgccagcttgacccgcgtattaccgcgaagcgaccgctt
actttcttctgctacggcgtcggtattctggagggcggcgagctgccggatacgcacctc
ggacgcctgctgcagtttaaagcgtggggcctgccggtgagcaaccgcgttcagctctgc
gactcgccggaagcggtgctggcgttctaccacaaggtggaagaggaccgtccgacgctc
ggttttgatattgatggcgtcgtcatcaaggtgaattcactggcgctgcaggagcagctg
ggctttgtggcgcgcgcgccgcgctgggcggtggcgtttaagttccctgctcaggagcag
atgaccgtcgttcgcgacgtggagttccaggtcggtcgtacgggggcgattaccccggtc
gcccgtctggagcccgtgcaggttgcgggcgtgctggtgagtaacgccacgctgcataac
gccgatgaaatcgaacgcctcggcctgcgcattggtgacaaagtggtgattcgccgcgcg
ggcgacgttatcccgcaggtggttaacgtcgtggagtcggaacgtcctgccgatacgcgc
gagatcgtcttcccgacccactgcccggtgtgcggctccgacgttgagcgtgtggaaggt
gaagcggtggcgcgctgtactgggggcttaatctgtggtgcgcagcgtaaagaatcgctg
aagcacttcgtctctcgtcgggcgatggacgtcgacggcatgggcgacaagattatcgat
cagctggttgagaaagagtatgtccatacgccagcggatctcttcaggctgacggcaggt
aaactgaccggtctggatcgcatggggccaaagtcagcccagaatgtggttaacgcgctg
gaagccgccaaagagacgacctttgcccgcttcctgtacgcgctgggcattcgtgaagtg
ggtgaggcgacggcagcgggcctggcggcgtactttggtacgctggaggcgctggaaaag
gcaagcatcgacgagctgcagaaagtccctgacgttggcattgtggtcgccacgcacgtc
tttaacttcttcgccgaagagagcaaccgtgaagtcatcggcaagctgctggaagagggc
atcaggtggcccgcgccggtagtggttaacgccgaagagatcgacagcccgttcgccggt
aaaacggtagtcctgaccggcagcctgagtcagctttcacgcgacgatgcgaaagcgcgc
ctggtggcgctgggggccaaagtggcgggcagcgtgtcgaagaaaaccgacctggtgatc
gccggggaagcggcgggctctaagctggcgaaagcccaggagctcggcattgaggttatc
gacgaagcggaaatgatgcgtctgttaggagagtaa
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