Eucyclogobius newberryi (tidewater goby): 140364709
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Entry
140364709 CDS
T10929
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
eny Eucyclogobius newberryi (tidewater goby)
Brite
Chromosome and associated proteins [BR:
eny03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
140364709 (smchd1)
DNA repair and recombination proteins [BR:
eny03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
140364709 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
140364709
NCBI-ProteinID:
XP_072307104
LinkDB
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Position
Unknown
AA seq
1968 aa
AA seq
DB search
MLPAVSRRLEERRRNLCVYDRRFPNSKRKEEWLVTRGMDFLKFLRILSETFSVADHETFL
LVTTERTPLDAERFMRLDDGATLYMLQREDQVLEVPAEEWILFTPHHDTVVESGTFKYYD
SEGKKSLPYALADLVDNALSATVNNTGVRKIEIRMLFDESYGKPSVIVWDNGCGMTSKQL
NNWAVYKLSKFKRENGRDQGSYDRPGHVSRSLNSDISYFGVGGKQAAFYIGKTTRVISKS
SGSPDVHELVLSKALFEKKEKNKEDTYSTTIYNRKPGVSTHYKPEDSFLHDLIAEECKNE
SFTAVVITDVLQDHIPFLKEDYEVWTRQLAHIYHYYIHGANGNVQGAVPKSSITDSEQIS
KVDIQITIQKKKSPYVVNLRDIETDLQSLYVKAAVSTFEFKACTNPEAGVVEGIIRYHPF
LYDRETYPEDPDAPNEYVEDDEDDSNPDGQAKKLRRPVFECYWNGRLIPYTAVQEFDWCS
QPHKGSKVPAECYNRFSGVLFTDDTFKVTENKLTFIDLEQKLKNKDTIFTFVMKGQKQRI
NLQKEFVQWLQKCHEEFDKQVKFMNYQGTITRTDIPTKRNQHPWATFSSMEWEGRLYKTG
DYVKSIKTSPIYNGKVHRFLLFGTHDDDGDVYGCGGQVEICLEPKGLYEKTKIIHVAKLD
GSATVEEIKKSIKNDSAKLPDKLHVHWPHKNPWSDNTSWPAGTVLGPIQVKILNKKGETS
GMSRLPSVGQGAGKRMSVVLRLVHHVPDGDQEMSSLEAQHSSKWDFWFKGIENIVALGKY
TLHLITIQTETKAIEFGERLLPQFKLEFTIKEGVADQFDVAKMDSTVRIGVPFDISLQIK
DKHGHATEPPPDLKPTLKCSGLDVAYEHETCGSDIIIKKVKATGKLKYHVEPNPFDLTLT
LNFGLGDHSKTLKMNVLPGCPHSIHVIPEDKPIEVENGNTVKFNVMIQDEAGNITTTPKM
TVRCLVSAYPPANINCMAGVGEHVTKPINLSLTKGMKQILKVRFSVPSRSGIEEVARELL
VLPSKRVNRMTVYKKDVDLELKNNERIEWMAGSVLENLCFMLYDEGDRKVPITAEVASKV
KVNWTGKMNLEELKEGKLPNVTVPTKVQDNHFYQVSYQDQSVSVSFTIVPIPDVPAGLKP
ILPKFTPRLGEILPEHIVLALVDRYENVTKTMTPSSVNEITVEAEGLDKQALTLNFEESS
GSVLVTGVCFSSGTPGFREMTFTFRKFTGHVRFEVTAGVPAKLALVNEHTQLMHVLNGHG
IPTPFVIQLCDLWGNPSPDKRVVVKISASSELKVKTDVLSRPVDAEGRASFTVTDVSGPK
GLYELNFRGNFLKRPIPGPSVKLTVLPDPNKPVSLDVQYDATATFVAGESFPVFSVTVMS
DEGSPIINQQVVSMLYWKGEQSAEAPTNTPFEFQCCEPKENEKKDTFYFREKPIPERVGK
YTIQFCLRETKDKIALRSNQIVIDVVANKPMKLAPENLPQTQVVSYSNDIAKRILVENMT
LVIMDKFGNPAGQGLNGNVDICIKNVNSKSIEQLPLFEDETNCNIKLENGTAHVSTLAIR
KKSPGKHGVMYMVLFKPILSSSFPGNLDAYEFHFGFSNDEENQKEFMALSRQKNSIKEAI
TRINDEQEIRKGIIKELKKLVQTSCEKELALRNELKNKWDVDIPENASIETLDEILNAKQ
LEAEGILNTPRRTCNIQNHEGINILGKVCHLAQVSDDADAWVISWHIRGDMDCVVTTITT
AACEIYDLTHGRQQVLPLETINSSWRRPLPSLPHIQHGRLLFNPTGNPEYAANVLIHPKN
QAQCEILFRNLLGKTILIDDLDSANLYRQSVVRNNIPCPTILTRNGEKVNANGKFGGAQN
RAPRPNQLHLFAAPLPECYYSLTNIIDLLTQYSAALKKKLEFKLDLQKVYTEHGPIIQQN
RQSLGGYEHQLQEIEIKLATPLKTMKRASYCCGETSGETGKRAKLTSR
NT seq
5907 nt
NT seq
+upstream
nt +downstream
nt
atgctgcccgccgtatctcgtcgtttagaggaaagaagaaggaacttgtgcgtctatgac
cgtcgatttccgaacagcaagagaaaagaagaatggcttgtcacgagagggatggacttt
ctgaaatttctccgcatcttgtccgagacattttcagttgcagaccacgaaacgtttctt
ttggtcacaacagagaggacgcccctggatgcagagagattcatgcgactagacgatggt
gccactctgtacatgttgcagagagaagaccaagtgctagaggtgcccgcagaagagtgg
attttgttcactcctcatcatgatactgtggtggagagtggcaccttcaaatactacgac
agcgagggcaagaaatcgctcccatatgccctggcggatctggttgacaacgcactttca
gccacagtcaataacactggagtgcgaaaaatagaaatacgaatgctttttgacgaaagc
tacggaaaaccatccgtcatcgtgtgggacaatggttgtggtatgacttctaaacaactc
aacaactgggcagtgtacaaactctccaaatttaaaagggaaaatggcagggatcaaggc
agttatgatcgtcctggccatgtttctcgaagtttgaacagcgacatatcctactttgga
gtaggaggaaaacaggccgctttctacattggaaagacaaccagggtcatcagcaaatcg
tcaggttctcccgatgtgcacgagcttgttttgtccaaagccttattcgagaaaaaggaa
aaaaacaaagaggacacttatagcacgaccatctacaatcgtaaaccgggtgtgtccacg
cactataaaccggaggacagttttctgcatgacctcatcgcagaggaatgtaagaatgag
agtttcactgctgttgttattactgatgtcctgcaagaccacataccatttctcaaggag
gactatgaagtgtggaccaggcagcttgcacacatctatcactattatatacacggggcc
aatgggaacgttcaaggagcagtaccaaaatcaagcattacagattcagagcagatctca
aaagttgacatccagatcacgatccaaaaaaaaaagagtccttatgtagttaatctccga
gacattgagacggacttgcagagtttgtacgtaaaggctgccgtctctacatttgagttc
aaagcctgtactaacccagaggcaggtgttgtagagggcataatacggtaccaccccttc
ctgtatgaccgggagacgtaccccgaagaccctgatgcccctaatgaatatgttgaagat
gatgaagatgacagtaatcctgacggccaagcaaaaaagctaaggaggccggtgtttgaa
tgctattggaatggacgtcttattccatatacagcagtacaagaattcgattggtgtagc
cagcctcataaaggatcgaaggtgccggctgaatgctacaatcgcttttccggtgtgctc
ttcacagatgacacgtttaaagtcactgaaaacaaacttacattcatagacctggagcag
aaactgaaaaacaaagacacaatattcacgtttgttatgaaggggcagaaacaaagaatt
aatctccagaaggagtttgttcagtggctacaaaaatgtcatgaagagttcgacaaacaa
gtgaagtttatgaactaccagggcacaatcacacggactgacataccaaccaagaggaac
caacatccttgggccacattttcatccatggaatgggaaggcagactttacaagacaggc
gattatgtgaagtctataaaaacaagccccatttacaacggtaaagtgcatcgcttcctg
ttgttcggaactcatgatgatgatggagacgtgtatggatgtggaggtcaggtggaaatt
tgtttggaacccaaaggactttatgaaaagacaaaaatcatacatgtagccaaacttgac
ggaagtgctactgttgaagaaatcaagaagagcattaagaatgactctgcaaagcttcca
gacaaacttcatgtgcattggccacacaaaaacccatggtctgataacacttcttggcca
gctggaactgtgttaggacctatacaagtaaagattctgaataagaagggggagactagt
ggtatgtccaggctgccatctgtaggacaaggagcgggcaaaaggatgtcagttgtgctc
agattagtgcatcatgttcctgatggagatcaagaaatgtcctctctggaagctcagcat
tcatccaagtgggatttttggttcaaagggattgaaaatattgtggcacttggaaaatat
acattgcatttgatcacaattcaaactgagaccaaggccattgaatttggagaaagactt
cttcctcaatttaaacttgaatttaccatcaaagagggtgtggcagatcagtttgatgtg
gccaaaatggactcaacagttcgtattggagttccttttgatatttcgttgcagattaag
gacaaacatggccatgccactgaacctcccccggatctgaaacccacgcttaagtgcagc
ggtttagatgttgcatatgaacacgagacatgtggtagcgacataattatcaaaaaagtc
aaagcaacaggaaaactcaagtatcatgtcgaaccaaatccgtttgacctaacgttgact
ctaaattttggcctcggagaccactcaaaaacattgaagatgaatgtacttcctggttgc
ccacactccatccatgtaattcctgaagacaaaccaatcgaggtggaaaacggcaacaca
gttaaattcaatgttatgattcaagatgaggctggaaacatcactacaacaccaaagatg
accgttcgatgcttggtatcagcatatccaccagcaaacataaactgcatggccggagtc
ggtgaacatgtgacaaaaccgatcaacctgtcacttaccaagggcatgaaacaaatcctt
aaagttcgattcagcgttcctagtcgaagtggaatagaagaagttgcacgcgagctgctt
gtgttgcccagcaaaagagttaatcgcatgacggtttataaaaaggatgtggatcttgag
ctaaaaaacaacgagaggatcgaatggatggctgggtctgtgttggaaaatctgtgcttt
atgctctacgatgagggcgatagaaaggttcccatcacggctgaggtggcttcaaaagtt
aaggttaactggactgggaagatgaatctggaagagttgaaggaaggcaagctccctaat
gtcacagtaccaaccaaagttcaagataatcatttttaccaagtgtcgtatcaggaccag
agtgtctcggtctcctttaccattgtgcctattccagatgtgcctgcaggattaaaacct
attctaccaaaattcacaccaaggcttggagaaattctgcctgagcacatagttctagcg
cttgtggaccgatatgaaaatgtcacaaagacaatgacaccctccagtgtgaatgaaata
acagttgaggccgagggcctggacaaacaagctttaaccttaaattttgaggagagtagc
ggttcagttctggtgactggagtgtgcttcagctctgggacgcctgggttcagggagatg
acttttacctttagaaagtttactggccatgtcagatttgaagtgacagcaggagttcct
gcaaagcttgcacttgtcaatgagcatacccagcttatgcatgtcttgaacggccatggc
attcccacaccatttgtaatccagctgtgtgacctgtggggtaatccctctccagataag
agggtggtggtgaaaatttcagcctcatcagaattaaaggtgaaaacggatgtattgtcc
cggccagtggatgcagaagggcgggcttccttcactgtgactgatgtgagcggaccaaag
ggattgtatgagctgaactttagaggaaactttttgaaaaggccaatccctggaccatct
gtaaagctgactgtcctgcctgatcccaataaacccgtcagcttagatgtccagtatgat
gcaactgccacttttgttgctggggaatccttccctgtattttcagtgacagtgatgtca
gatgaaggcagcccaataataaaccaacaagttgtgtctatgctgtattggaaaggagag
cagtcagcagaggcccccacaaatacaccatttgagtttcagtgctgtgaacccaaagag
aatgaaaaaaaggacactttttatttcagagaaaaacccatccctgaacgtgttggaaaa
tatactatccagttctgcttacgtgaaacaaaagacaaaatagcactccgaagtaatcaa
attgttattgatgtggttgcaaataagccaatgaagctggctcctgaaaatctgccgcaa
acacaagttgtgtcttacagcaatgacattgccaaaagaatcttggtggagaacatgact
ctggtgataatggataagtttggtaacccagccggtcaaggactgaacgggaatgttgac
atatgtataaaaaacgtgaacagcaagagcatagaacaactgcctttgtttgaagatgag
acgaactgtaacattaagctggagaatggaacggctcatgtgtctactctagcaataagg
aagaaaagtcctgggaaacatggggtcatgtatatggtccttttcaaacccattctttcc
tcgagttttcctgggaatctggatgcttatgagtttcactttggcttttccaatgatgaa
gagaatcagaaagaatttatggcattgtccagacaaaagaatagtatcaaagaagctatt
acccggataaacgatgaacaggaaatccgcaaaggcatcatcaaagagctcaaaaagcta
gtacaaacatcatgtgagaaagagcttgctcttcgaaatgaactcaaaaacaagtgggat
gtggacatacccgagaatgcatctattgaaacattggatgaaatcctgaacgcgaaacag
cttgaagctgaagggattcttaatacgcccagaagaacttgtaatattcaaaaccatgag
ggcataaacattttaggaaaggtttgtcacttggcgcaggtgagtgatgatgctgacgca
tgggtgatctcttggcacatcagaggtgacatggactgtgtcgtcaccaccataaccaca
gctgcatgtgaaatctatgacctcacgcatggcaggcagcaggttctgcccctcgaaaca
atcaactcttcttggaggagacccttgccatcattaccccacatacaacatggtcgctta
cttttcaatccaacgggaaatccggagtacgctgcaaatgttctaattcaccctaaaaac
caagcgcagtgtgagattctttttagaaaccttctcgggaaaaccattttgattgatgat
ctggactctgcaaacctatacagacagtctgtggtgagaaacaatattccgtgtcccacc
atcctcaccagaaatggggagaaggtcaacgccaatggaaaatttggtggtgcacagaac
agagccccacgcccgaaccagctgcatttgttcgcggccccacttcctgagtgctactac
agccttacaaatattatagatctactcactcagtattcagctgctctgaaaaaaaagcta
gaatttaaattggacctccagaaggtgtacacagaacatgggcctataatccagcagaat
cgtcagtctttgggaggatatgaacatcaactgcaagagattgagataaaactcgcgacc
ccacttaagaccatgaaaagagcatcttactgctgtggagaaacgtcgggcgagactggc
aaacgagcaaaattgacatcaagataa
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