Emys orbicularis (European pond turtle): 135881317
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Entry
135881317 CDS
T11511
Symbol
LSM3
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm3
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
eob Emys orbicularis (European pond turtle)
Pathway
eob03018
RNA degradation
eob03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
eob00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135881317 (LSM3)
09123 Folding, sorting and degradation
03018 RNA degradation
135881317 (LSM3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eob03019
]
135881317 (LSM3)
03041 Spliceosome [BR:
eob03041
]
135881317 (LSM3)
Messenger RNA biogenesis [BR:
eob03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
135881317 (LSM3)
mRNA degradation factors
5'-3' decay
Lsm complex
135881317 (LSM3)
Spliceosome [BR:
eob03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
135881317 (LSM3)
Complex C
U2 snRNP components
135881317 (LSM3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
TIG_SUH
vATP-synt_E
RimP_C
Motif
Other DBs
NCBI-GeneID:
135881317
NCBI-ProteinID:
XP_065264014
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All DBs
Position
7:111082754..111089559
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AA seq
102 aa
AA seq
DB search
MADEVDQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET
VTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG
NT seq
309 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgaagtggaccagcaacaaacaacaaatactgtagaggagccactggatctg
atcagactcagtctagatgaacgaatctatgtgaaaatgaggaatgaccgagaacttcga
ggcagattacatgcttatgatcagcacttaaatatgattttgggtgatgttgaagagacc
gtgacaacaatagagattgatgaggaaacctatgaagagatttataaatctaccaagagg
aatattccaatgctctttgtcagaggtgacggcgttgtgctcgtagctcctccattgcgg
gttggctga
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