Emys orbicularis (European pond turtle): 135894659
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Entry
135894659 CDS
T11511
Symbol
EFTUD2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
eob Emys orbicularis (European pond turtle)
Pathway
eob03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
eob00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135894659 (EFTUD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
eob03041
]
135894659 (EFTUD2)
Spliceosome [BR:
eob03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
135894659 (EFTUD2)
Complex C
U5 SnRNP specific factors
135894659 (EFTUD2)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
135894659
NCBI-ProteinID:
XP_065278867
LinkDB
All DBs
Position
25:complement(13871178..13911462)
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AA seq
972 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDDDDDELGREAKDLDELDDDDDDDDIGDHDEDHPGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFSLMEQTLPVTVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
IKSTPVTVVLPDTKGKSFLFNVMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
SPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PTSSSQRSFVEFVLEPLYKILAQVVGDVDTTLPHTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVQHIPSPKVGAKTKIEHTYTGGVDSDLGEAMSECDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPAGNWILIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggacacagacctgtatgatgagtttgggaattacattgggccagagctcgactctgat
gatgatgatgatgaactgggcagagaggccaaggatcttgatgagcttgatgatgatgat
gatgacgatgatataggagatcatgatgaagatcatcctggaatggaggtggtactgcat
gaggataagaaatactatccgactgctgaagaggtttacggacctgaggtagagaccata
gtgcaggaggaagatacccagcctctcactgagcctattattaaacctgtgaaaaccaag
aaattctccctgatggagcagacgttgcctgtcactgtatatgagatggatttcctggca
gatctgatggacaactctgagctgattcggaatgtgaccctgtgcgggcatctccaccat
ggcaagacttgttttgtggattgcctgatagagcagacgcacccagagatcaggaagcgc
tacgaccaggatctttgctacactgacatactgttcacggagcaagagaggggtgttggc
atcaagagtaccccagtgactgtggttctaccagacaccaaggggaaatcctttctcttc
aacgtcatggacacgccaggccatgtgaacttttctgatgaggttactgccggccttcgt
atttcagacggagttgtgcttttcattgatgcggccgagggggttatgctgaacacagag
aggctgatcaagcacgcagtgcaggagaggctggcagtgaccgtgtgcattaataagata
gatcggctgatcctggagctgaagcttccccccaccgatgcctattacaaactccgacac
atagtagatgaggtcaacggcttgatcagcatgtattccactgacgagaacctgatcctc
tcccctcttctggggaacgtctgcttctccagttcccagtacagcatctgcttcacgctt
ggctcctttgcaaagatttatgcagacacgtttggagacatcaattaccaggagtttgca
aagcggctttggggtgacatctacttcaaccccaagacacgaaagttcactaaaaaggcc
ccgaccagcagttcccagcggagctttgtggagtttgtcctagagcccctgtacaagatc
ctggcgcaggtggttggtgatgtggacaccaccctcccccacactctggatgagctgggc
atccacctgaccaaagaggagctgaagctaaacattcgacccctgctaaggcttgtctgc
aagaagttctttggggagttcacaggctttgtggacatgtgtgtgcagcacattccctcc
ccaaaggtgggagccaagaccaaaatcgagcacacctacaccggcggcgtcgactcagac
ctgggggaggccatgagcgagtgtgaccctgatggtccactaatgtgtcacaccacgaaa
atgtacagcacagacgacggggtccagttccacgcctttggcagggtgctgagtgggacc
atccatgcagggcagcccgtgaaggtactgggagaaaactacacgttggaggatgaagag
gattcccagatctgcactgtgggacggctctggatctcggtggcaagataccacatagag
gtgaaccgagtccctgccggcaactggatcctaatagagggggtggaccagcccattgtg
aagactgcaaccatcacagagcctagaggcaatgaggaggctcagatcttccgtccattg
aagttcaacaccacgtctgtcatcaaaatagccgtggagccagtcaacccttcggagctc
cctaaaatgttggatggcctgcggaaagtcaacaagagctacccgtcgctcaccaccaag
gtggaagaatctggggagcacgtgatcctggggacaggggagctgtacctggactgtgtg
atgcatgacttacggaagatgtattcggagattgatatcaaggttgctgatccggttgtg
acgttctgcgagactgttgtggaaacttcctccctgaagtgttttgctgagacacccaat
aagaagaacaagatcacaatgattgctgagccactggagaaggggctcgcggaggacatt
gagaacgaggtggtccagatcacctggaacaggaagaagctgggcgagttcttccagacc
aagtatgactgggatttgctggctgcccgctccatctgggcctttgggccagacgctact
ggcccaaacattctggtagatgacacgctgccctcggaggtggataaggccctgctgggc
tctgtgaaggacagcatcgtacaggggttccagtggggcacaagggaaggacccctctgt
gatgagttgatccgcaacgtgaagtttaagatcctggatgccgtgatcgctcaggagccg
ctgcaccggggaggagggcagattatcccaacagcgaggagggttgtgtactccgccttc
ctcatggccactcctcggctgatggaaccgtactactttgtggaggtccaggcccctgct
gattgtgtgtctgcagtgtacactgtgctggcccggcggagaggtcatgtgactcaggac
gctccaatcccaggctccccgctttacaccatcaaagcctttatcccagccattgactca
tttgggtttgagactgacttgaggactcacacgcagggacaggctttctctctgtccgtc
ttccaccattggcagatagtgcctggagaccccttggacaagagtatcgtcatccggccc
ttggagccccagccagcacctcacctggccagagagttcatgatcaagaccaggcgcaga
aagggcttgagcgaggacgtgagcatcagcaagttcttcgacgaccctatgttgctggag
ctggccaagcaggatgttgttctgaactaccccatgtga
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