Edaphobacter paludis: P4G45_00725
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Entry
P4G45_00725 CDS
T10404
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
epl Edaphobacter paludis
Pathway
epl03030
DNA replication
epl03410
Base excision repair
epl03420
Nucleotide excision repair
epl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
epl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
P4G45_00725 (ligA)
03410 Base excision repair
P4G45_00725 (ligA)
03420 Nucleotide excision repair
P4G45_00725 (ligA)
03430 Mismatch repair
P4G45_00725 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
epl03032
]
P4G45_00725 (ligA)
03400 DNA repair and recombination proteins [BR:
epl03400
]
P4G45_00725 (ligA)
Enzymes [BR:
epl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
P4G45_00725 (ligA)
DNA replication proteins [BR:
epl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
P4G45_00725 (ligA)
DNA repair and recombination proteins [BR:
epl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
P4G45_00725 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
P4G45_00725 (ligA)
MMR (mismatch excision repair)
DNA ligase
P4G45_00725 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
P4G45_00725 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
Nlig-Ia
5_3_exonuc
BRCT_2
MutL
HHH_3
RNA_pol_A_CTD
RUBY_RBDX
DUF4796_N
HMBD
Motif
Other DBs
NCBI-ProteinID:
XBH11707
UniProt:
A0AAU7DEM3
LinkDB
All DBs
Position
complement(196584..198692)
Genome browser
AA seq
702 aa
AA seq
DB search
MAAALTPDQQIQALRDELRQHEYLYYVLDAPKLTDAQYDALMNRLKKLEAEHPDLITADS
PTQRVGGKPREGFVKTPHSRPMLSLDNAYNEEELRAWDLRVREALPSSETVRYVCELKLD
GLSLALHYAAGASGAAHLVRGLTRGDGSIGEDVTSNVRTIRSVPLSISVAKLKAAGLPQT
FEVRGEVVLPQSAFVKMNEEREAQGLAPAANPRNAAAGTIRTLEPNIVAQRRLDFYAYFL
LRDGEMLLESQSDTLESLRASGFRVNQYAKTVNDIDAVVKFIADAEPLRDTLGYEIDGVV
IKVDATAQQRRLGFTGKAPRWAIAYKFAARAGITQLEDVLFQVGRTGKVTPVAALAPVSI
GGTTVTRATLHNADEIARLGVRIGDFVQVERGGDVIPKIVMVVDDAVHPRGTKEIVFPEK
CPVCGSDLKKVVGEVDWRCVNNSCPARVREELLHWAARGVMNIEGLGDAMVAQLLGQSAE
LGGGVDEAVTDEGAPVEIRKPLIHTIGDLYRLKREKLLGLERVGEKTADALLAQIEQSKS
AGLARVLLGLGIRFVGERTAQLLAEHFGSMDALMNASAEELEAVNEVGPKVAQAIVEFFA
VEKNLQLVRDLESLGLRLTAEKRVKTSTLEGLTFVLTGTLPNLTREAAKEKIESAGGKVS
GSVSKKTSYVVAGEEAGSKLDKANSLGVSVIDEAGLLALVDG
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgctcttactcccgatcaacagattcaggcgttgcgtgatgagcttcgtcaa
catgagtatctttattatgttctggatgcgccgaagctgactgacgcgcagtatgacgcg
ctaatgaatcggctgaagaagctggaggccgagcatccggatctgatcacggcggactcg
ccgacgcagcgtgtgggtggcaagccgcgtgaggggtttgtaaagacaccgcactcgcgg
ccgatgttgtcgctggacaatgcatataacgaagaggagctgcgggcatgggacctgcgg
gtgcgcgaggcgctgccaagctcggagacggtgcggtatgtgtgcgagctgaagctggat
ggactttcgctggccttgcattatgcagcgggtgcatctggtgcggcgcatctggtgcgg
gggcttacgcgcggggatggctcgattggcgaggacgtcaccagcaatgtacgcacgatt
cgatcggtgcccctaagtatttcggtggcgaagctgaaggcggcggggttgccgcagacg
tttgaggtgcggggcgaggtagtgctgccccagtcggcgttcgtgaagatgaatgaagag
cgcgaggcacaggggttggcgccagcggcaaatccgaggaacgcagcggctgggacgatc
cgcacgctggagccgaacattgtggcgcagcggcggctggatttctacgcatactttttg
ttgcgggatggcgagatgctgttggagtcgcagtcggatacgctggagtcgctacgggcg
tcgggcttcagggtaaatcagtatgcgaagacggtgaatgacatcgatgcggtggtgaag
tttatcgccgatgcggagccgctacgcgacacgctgggctatgagatcgatggcgtggtg
attaaggtggacgccacggcgcagcagcggcggctggggtttacgggcaaggctcctcga
tgggcgattgcttataagttcgctgcgcgtgcggggattacgcagcttgaggatgtgttg
tttcaggtgggtcggacaggcaaggtgactcccgtagcggcgttggcgccagtgtcgatt
ggcgggacgacggtgacgcgggcgacgctgcacaatgcggatgagattgcccggctgggc
gttcgtatcggcgactttgtacaggtggagcgcggcggggatgtgattccgaagatcgtt
atggtggtggatgacgcggtgcatcctcgcgggactaaagagattgtgtttccggagaag
tgtccggtgtgcggaagcgatctgaagaaagtggtgggtgaggttgactggcggtgcgtg
aacaactcatgtccggcacgggtgcgagaggagttgctgcattgggcagcacggggtgtg
atgaatatcgaaggtctgggagatgcgatggtggcgcagctgctgggccaaagtgcggag
ttgggtggcggagtggacgaagcggtgacggatgagggtgcgccggtcgagattcgtaaa
ccgcttatccatacgattggcgatctgtaccggttgaagcgcgagaagctattggggctg
gagcgcgttggggagaagacggcggatgcgctgctggctcagattgagcaatcgaagagc
gcagggctggcacgagtgctgctggggctgggaatacggtttgtaggagagaggacggcg
cagcttctggcagagcacttcggttcgatggatgcgttaatgaacgcctcggcggaggag
ttggaggctgtgaatgaggtgggaccaaaggtggcgcaggcaattgtggagttctttgcg
gtggagaagaatctgcagttggtgcgtgacctggagtcattgggcctcaggcttacggct
gagaagcgggttaagacttcgacgctggaagggctgacgtttgtgttgacggggacgctg
ccgaatcttacgcgggaggcggcgaaggagaagatcgaatcggccggggggaaggtttca
ggtagtgtcagcaagaagaccagctatgtggttgccggagaagaggccggatcgaagctg
gataaggccaattcgctgggggtttcggtgatcgatgaagccgggttgctggcgctggtg
gatggctaa
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