Endomicrobium proavitum: Epro_0487
Help
Entry
Epro_0487 CDS
T03965
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
epo
Endomicrobium proavitum
Pathway
epo03030
DNA replication
epo03410
Base excision repair
epo03420
Nucleotide excision repair
epo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
epo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Epro_0487 (ligA)
03410 Base excision repair
Epro_0487 (ligA)
03420 Nucleotide excision repair
Epro_0487 (ligA)
03430 Mismatch repair
Epro_0487 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
epo03032
]
Epro_0487 (ligA)
03400 DNA repair and recombination proteins [BR:
epo03400
]
Epro_0487 (ligA)
Enzymes [BR:
epo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Epro_0487 (ligA)
DNA replication proteins [BR:
epo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Epro_0487 (ligA)
DNA repair and recombination proteins [BR:
epo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Epro_0487 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Epro_0487 (ligA)
MMR (mismatch excision repair)
DNA ligase
Epro_0487 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Epro_0487 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
BRCT_2
PTCB-BRCT
DUF7408
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AKL97866
UniProt:
A0A0G3WGR4
LinkDB
All DBs
Position
606621..608834
Genome browser
AA seq
737 aa
AA seq
DB search
MNKDIKNRIHYLRDEIERHNKLYYGADNPEISDAEYDILVKELEKLERENPEFALKNSPT
QKVSGFASSSFEKVKHAVPMLSLDNTYNEAEIAAWYDRVCKNLIANYRLPTTNNNLEFTI
EPKIDGVSASLTYINGNLTIGATRGDGETGEDITENIKTISEIPQKLNVTNPPLFFELRG
EVYINKADFEKINEEILAADGQKFANPRNAAAGSLRQKNPQITAQRKLKFFVHSYGKIEQ
QSAKLKVKSENAEKNNYIDPTPLHKTTNNNNPAAVNSPFTKGVDANADGVFSDQAKSQGD
GGSDTALFQTHSDFLNYCQKCGFKLQADIITCKTLKEILTFINKMMQKREELPYEIDGLV
IKVNSQAQQKELGYTNKSPRWAIAYKFPAKQATTKLNKIEVHVGRTGIITPRAILEPVAL
GGVTISHATLHNFEEIERLNVNEGDTILIERAGDVIPKIIKVVIKNSENYFQPPKNCPSC
NSKIVKEDEQEVGYRCINPECPAQFRRHLMHFVSRNAMDIDGFGEAIIDQLLEKKKLKIL
ADIYRLTFEDFLELELFKEKKANNLIKAINDSKTRPLSRLLFALGIRHIGEKASEIIVKR
FKTIEAIYAATVDDFTRINEIGDVLAISLKEFFEEPEVKHVIDTLIAAGVNTTEPETTSA
GTKFEGKTFVLTGELINYTREEAGAIIKSLGGKVTNSVSKKTDYVVTGENAGSKLDKAKE
LGVRVIDSKKFEELLKL
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagacataaaaaaccgcatacattatttaagagatgaaattgaacgccataat
aaactttattacggcgcagataatcctgaaatatcagacgccgaatacgacattctggtt
aaagaacttgaaaagcttgaaagagaaaatccggaatttgcattaaaaaattctccaacg
caaaaagtgtccggctttgcttcttcgtcttttgagaaagtaaaacacgcagtgccgatg
ttatcgcttgataacacttacaacgaagcggaaatcgccgcatggtacgatagagtttgc
aagaatttaattgcgaattaccggttgccaactaccaacaacaatcttgaattcacaata
gaacccaaaatagacggcgtaagcgcaagccttacctatatcaacggaaatttaacaatc
ggcgctacgcgcggcgacggggaaacaggcgaagacattacggaaaacataaaaacaatt
agcgaaattccgcaaaaacttaatgttacaaacccgccgctattttttgaacttcgcggc
gaagtttatataaacaaagctgattttgaaaaaataaacgaagaaattttagcagcagac
ggacaaaaatttgccaacccacgcaacgccgcggccggttcgctgcgtcaaaaaaatccg
caaattacagctcaacgcaaactaaaatttttcgtccactcatacggtaaaatagaacaa
caaagtgcaaagttgaaagtgaaaagtgaaaatgcggagaaaaacaattacatagaccct
acgcctttacacaaaacgacaaataataacaatccggcagccgtaaattccccttttaca
aaaggggtggacgcgaatgcggacggggtattttccgatcaagcgaagagtcaaggggac
ggtggtagtgacaccgcgttattccaaactcattctgactttttaaattactgtcaaaaa
tgcggcttcaagcttcaagcagacattataacctgcaaaacgttaaaagaaattcttact
tttataaataaaatgatgcaaaaaagggaagaacttccctacgaaatagacgggcttgta
ataaaagtaaactcgcaagcgcagcaaaaagaacttggctacacaaataaaagcccgcgc
tgggctatagcgtataagtttccggcaaaacaggctactacaaaattaaataaaatagaa
gttcacgtaggacgaacaggaataataacgcctcgcgcaattttagagccggtagctttg
ggcggcgtaacaatatcgcatgcaacgcttcataattttgaagagatagaacgcttaaat
gtaaatgaaggcgacacaattttaatagagcgcgccggcgacgtaatccctaaaataata
aaggttgttataaaaaacagcgaaaactattttcagccgccaaaaaattgtccgtcgtgc
aacagcaaaattgttaaagaggacgagcaagaagttggctacagatgtataaatccggaa
tgtcccgcgcagtttagacgccatttaatgcattttgtaagcagaaacgctatggacata
gacggtttcggcgaagcaataatagaccagcttttagaaaagaaaaaacttaaaattttg
gcagacatttaccgcttaacctttgaagattttttagaacttgaacttttcaaagaaaag
aaagccaacaatttaataaaagcaatcaacgacagcaaaacccgtccgttaagcagattg
ttatttgcacttggcatacgccacataggcgagaaagcctcagaaataatcgtcaaacgc
tttaaaacaattgaagccatatatgccgccaccgttgatgacttcacaagaataaacgaa
ataggcgacgttttagccatatccttgaaagagttttttgaagagccggaagtaaaacac
gtaattgatacattaattgccgccggcgtaaacacaaccgaacccgaaacaacgtctgcc
ggcacaaaatttgaaggcaaaaccttcgtcctgaccggcgaactaataaactatacaaga
gaagaagcaggcgcaataataaaatctttaggcggaaaagtaacaaactctgtaagcaaa
aaaacggattacgtggtaaccggagaaaatgcaggaagcaagctggataaggcaaaagag
ctgggtgtgagggttattgacagtaaaaaatttgaggagctgttgaagttgtaa
DBGET
integrated database retrieval system
