Enterobacter pasteurii: HWQ17_19955
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Entry
HWQ17_19955 CDS
T09666
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ept
Enterobacter pasteurii
Pathway
ept03030
DNA replication
ept03410
Base excision repair
ept03420
Nucleotide excision repair
ept03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ept00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HWQ17_19955 (ligA)
03410 Base excision repair
HWQ17_19955 (ligA)
03420 Nucleotide excision repair
HWQ17_19955 (ligA)
03430 Mismatch repair
HWQ17_19955 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ept03032
]
HWQ17_19955 (ligA)
03400 DNA repair and recombination proteins [BR:
ept03400
]
HWQ17_19955 (ligA)
Enzymes [BR:
ept01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HWQ17_19955 (ligA)
DNA replication proteins [BR:
ept03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HWQ17_19955 (ligA)
DNA repair and recombination proteins [BR:
ept03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HWQ17_19955 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HWQ17_19955 (ligA)
MMR (mismatch excision repair)
DNA ligase
HWQ17_19955 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HWQ17_19955 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
RNA_ligase
DUF2229
Motif
Other DBs
NCBI-ProteinID:
QLA69757
LinkDB
All DBs
Position
4192385..4194400
Genome browser
AA seq
671 aa
AA seq
DB search
MDSIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEARHPELITPDSPTQ
RVGAEPLGAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSVDNLSWCCELKLDGLA
VSILYENGVMVRAATRGDGTTGEDITTNVRTIRAIPLKLRGDNIPARLEVRGEVFLPQAG
FEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHL
GRLLQFKEWGLPVSNRVQLCDSPEAVLAFYHKVEEDRPALGFDIDGVVIKVNSLALQEQL
GYVARAPRWAVAFKFPAQEQMTVVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIARLGLRIGDKVVIRRAGDVIPQVVNVVESERPADTRAIEFPAHCPVCGSDVERVEG
EAVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFTLTAG
KLTGLDRMGPKSAQNVVNALEAAKNTTFARFLYALGIREVGEATAAGLAAYFGTLDALEK
ASIEDLQKVPDVGIVVATHVFNFFAEESNREVIGKLLEQGIHWPAPVVVNAEEIDSPFAG
KTVVLTGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIDVI
DEAEMMRLLGE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggactcaatcgaacaacaacttactgaactgcgaaccacgcttcgccatcatgaatat
ctctatcatgttatggacgccccggaagtgccggatgcggaatatgaccgcctgatgcgc
gagctgcgcgagctggaagcccgccatccggagctgattacgcccgactccccgacgcag
cgcgtcggcgcggaaccgcttggcgcattcagccaggtgcgccacgaggtgccgatgctg
tcgctggataacgtgtttgatgaagagagttttctggctttcaacaagcgcgtgcaggat
cgcctgaagagtgtcgacaacctgagctggtgctgcgagctgaagctggacggtctggcc
gtcagtattctttatgaaaacggcgtaatggtgcgtgccgcgacgcgcggcgatggcacc
accggcgaagatatcaccaccaacgtgcgcaccatccgtgcgatcccgctgaagctgcgc
ggcgataacattcccgcgcggctggaagtacgcggggaggtgttccttccgcaggcgggc
ttcgagaagatcaacgaagaagcgcgccgcaccggcggaaaagtatttgcgaacccgcgt
aacgcggcggcaggctctctgcgtcagctcgatccgcgcatcaccgcgaagcgaccgctt
actttcttctgctacggcgtcgggatcctggaaggcggagaactgcctgatacccacctg
ggacgtttactccagttcaaagagtggggcttgccggtaagcaaccgcgtgcagctttgc
gactcccctgaggcagtgctggcgttctatcacaaggtagaagaagatcgtcctgctctc
gggtttgatattgacggcgtggtgatcaaggttaactccctggcattgcaggagcagctg
ggctacgtggctcgcgcgcctcgctgggcggtggcctttaaattcccggcccaggagcag
atgaccgtcgttcgcgacgtggagttccaggttggccgtacgggagcgattacgccggta
gcgcgtctggagccggtgcaggtggctggcgtgctggtcagtaacgccacgctgcacaac
gccgatgaaatcgcgcgtctgggcctgcgcattggcgacaaagtggttattcgccgcgcg
ggggatgtgataccgcaggtggttaacgttgtggagtcagagcgtcccgccgatacccgc
gccattgagtttccggcccactgcccggtatgcggttcggacgtagagcgcgtggagggt
gaagcggtaacgcgctgtacgggcgggttaatctgcggggcacagcgtaaggagtcgctc
aagcactttgtctcccgccgggcgatggacgtcgacggaatgggtgacaagattatcgat
cagctcgttgaaaaagagtacgtccatacgccagcagacctctttacgctgacggcaggt
aagctgaccggccttgaccggatggggccgaaatctgcccagaacgtggtcaatgcgctg
gaagcggcaaaaaatacaacctttgcccgtttcctttacgcgctcggcattcgtgaagtg
ggggaggcgacggcggcaggcctggcggcctatttcggcacgctggacgcgctggagaaa
gccagcattgaagatttacagaaagtcccggatgtgggcattgtggtcgcaacccacgtc
tttaacttcttcgccgaagagagtaaccgcgaggtgatcggcaaattgctggagcagggc
attcactggcccgcgccggtagtggttaatgcagaagagatcgacagcccgttcgcgggt
aaaacggtggtcctgaccggtagcctgagccagctctcgcgcgatgatgcgaaggcgcgt
ctggtggcgctgggggcaaaagtggcgggcagcgtgtcgaagaaaacggatctggtgatt
gccggggaagcggccggctccaagctcgccaaagcgcaggagctcggcattgacgtgatc
gacgaagcggaaatgatgcgtctgttaggagaataa
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