Enterobacter pseudoroggenkampii: QVH39_16690
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Entry
QVH39_16690 CDS
T09244
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
epu
Enterobacter pseudoroggenkampii
Pathway
epu03030
DNA replication
epu03410
Base excision repair
epu03420
Nucleotide excision repair
epu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
epu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QVH39_16690 (ligA)
03410 Base excision repair
QVH39_16690 (ligA)
03420 Nucleotide excision repair
QVH39_16690 (ligA)
03430 Mismatch repair
QVH39_16690 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
epu03032
]
QVH39_16690 (ligA)
03400 DNA repair and recombination proteins [BR:
epu03400
]
QVH39_16690 (ligA)
Enzymes [BR:
epu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QVH39_16690 (ligA)
DNA replication proteins [BR:
epu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QVH39_16690 (ligA)
DNA repair and recombination proteins [BR:
epu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QVH39_16690 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QVH39_16690 (ligA)
MMR (mismatch excision repair)
DNA ligase
QVH39_16690 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QVH39_16690 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
DUF2229
Prok-E2_C
DZR_2
Motif
Other DBs
NCBI-ProteinID:
WJW84870
LinkDB
All DBs
Position
complement(3485812..3487827)
Genome browser
AA seq
671 aa
AA seq
DB search
MDSIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPDLITPDSPTQ
RVGAEPLGAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSSDSLTWCCELKLDGLA
VSLLYENGVLVRAATRGDGTTGEDITTNVRTIRAIPLKLQGDNIPARLEVRGEVFLPQAG
FEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHL
GRLLQFKAWGLPVSNRVQLCDSPEAVLAFYHKVEEDRPTLGFDIDGVVIKVNSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVESERPDDTREIVFPTHCPVCGSDVERVEG
EAVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAG
KLTGLDRMGPKSAQNVVNALEAAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEK
ASIEELQKVPDVGIVVATHVFNFFAEESNREVIGKLLEEGIRWPAPVVVNAEEIDSPFAG
KTVVLTGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVI
DEAEMMRLLGE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggactcaatcgaacaacaactcactgaactgcgaaccacgcttcgccatcatgaatac
ctctatcatgttatggacgcaccggaagttccggatgcggagtatgaccgcctgatgcgc
gagctgcgcgaattagaggcgcagcatcctgacctcatcacaccggattcccccacccag
cgcgtcggcgctgagccgctgggggcttttagccaggtgcgtcatgaagtgccgatgctg
tcgctggataacgtcttcgatgaagagagcttcctcgcgtttaacaagcgcgtgcaggat
cgcctgaaaagcagcgactccctcacctggtgctgcgagctgaagctggatggcctggca
gtcagccttctctacgaaaacggcgtgctggtgcgtgccgcgacgcgtggcgacggcacg
acgggtgaagacatcaccaccaacgtgcgtaccatccgcgcgatcccgctgaagctgcag
ggcgacaacattcctgcgcgtctggaagtgcgcggcgaagtgttcctgccccaggcgggc
ttcgagaaaattaacgaagaggcgcgtcgcaccggtgggaaggtgtttgctaacccgcgt
aatgcggcggcgggctctctgcgccagcttgacccgcgtatcaccgcgaagcgaccgctt
actttcttctgctacggcgtcggtattctggagggcggcgagctgccggatacccatctc
gggcgtctgctgcagtttaaagcgtggggcctcccggtgagcaaccgcgttcagctctgc
gactcgccggaagcggtactggcgttctaccacaaagtggaagaggaccgtccgacgctc
gggtttgatattgatggcgtggtcatcaaggtgaactcactggcgctgcaggagcagctg
ggctttgtggcgcgcgcgccgcgctgggcggtggcgtttaagttcccggctcaggagcag
atgaccttcgtccgcgacgtggagttccaggtcggccgtacgggcgccattaccccggtt
gcccgtctggagcctgtgcaggttgcgggcgtgctggtgagtaatgccacgctgcataac
gccgatgaaatcgaacgcctgggcctgcgcattggtgacaaagtggtgattcgccgcgcg
ggcgacgtgatcccgcaggtggttaacgttgtggagtcagaacgtcctgatgatacgcgc
gaaattgtcttcccgacccattgcccggtctgcggatctgacgtagagcgtgtggaaggt
gaagcggtgacgcgctgcacgggtggcttaatctgcggcgcacagcgtaaagagtcactg
aagcacttcgtctcccgtcgggcgatggacgtcgacggcatgggcgataaaattatcgat
cagctggttgagaaagagtatgtccacacgccagcggatctcttcaaactgacggcgggc
aaactgaccggtctggaccgcatggggccaaagtcagcccagaacgtggttaacgcgctg
gaagccgccaaagagaccaccttcgcccgtttcctgtacgcgctgggcattcgtgaagtg
ggtgaagcaaccgcagcaggtctggcagcatactttggtacgctggaggcgctggaaaag
gcgagcatcgaggagctgcagaaagttccggatgttggcatcgttgtcgccacgcacgtc
tttaacttcttcgccgaagagagcaaccgcgaagtcatcggcaaactgctggaagagggc
atcaggtggcctgcaccggtagtggtcaacgccgaagagatcgacagcccgttcgccggt
aaaacggtggtgctgaccggcagcctgagccagctttcacgcgacgatgcaaaagcgcgt
ctggtggcgctgggggcaaaagtggcgggcagcgtgtcgaagaaaaccgacctggtgatc
gccggggaagcggcgggttcgaagctggcgaaagcccaggagctcggcattgaggttatc
gacgaagcggaaatgatgcgtctgttaggagagtaa
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