Erwinia pyrifoliae Ep1/96: EpC_11480
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Entry
EpC_11480 CDS
T01000
Symbol
lig
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
epy
Erwinia pyrifoliae Ep1/96
Pathway
epy03030
DNA replication
epy03410
Base excision repair
epy03420
Nucleotide excision repair
epy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
epy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EpC_11480 (lig)
03410 Base excision repair
EpC_11480 (lig)
03420 Nucleotide excision repair
EpC_11480 (lig)
03430 Mismatch repair
EpC_11480 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
epy03032
]
EpC_11480 (lig)
03400 DNA repair and recombination proteins [BR:
epy03400
]
EpC_11480 (lig)
Enzymes [BR:
epy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EpC_11480 (lig)
DNA replication proteins [BR:
epy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EpC_11480 (lig)
DNA repair and recombination proteins [BR:
epy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EpC_11480 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EpC_11480 (lig)
MMR (mismatch excision repair)
DNA ligase
EpC_11480 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EpC_11480 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
DZR_2
Prok-E2_C
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
CAX54927
LinkDB
All DBs
Position
1333901..1335937
Genome browser
AA seq
678 aa
AA seq
DB search
MESVQDKITHLRTLLRHYEYQYHVLDAPAVPDAEYDRLMGELRDLEAQHPELLTSDSPTQ
RVGAAPLSVFEQVRHEVPMLSLDNAFDEESYLAFNKRVQDRLKSTDDITFCCELKLDGLA
VSLLYEKGELVRAATRGDGTTGENITANVRTIRAIPLRLSGDNIPERLEVRGEVFMPLVG
FEQMNEQARSSGQKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGLGLLEGGEMPRSHR
ARLQRFKAWGLPVSDRVRLCHSPAEVLDFYHQVEAARPTLGFDIDGVVIKVDSLALQEQL
GFVARAPRWAVAFKFPAQEQMTTVRDVEFQVGRTGAITPVARLEPVLVAGVMVSNATLHN
ADEIERLGLKIGDRVVIRRAGDVIPQVMSVVETGDNAREIAFPTRCPVCGSDVERVEGEV
VARCTGGLICGAQRKGALKHFVSRRALDIDGMGEKIIDQLVDKEYVKNPAELFELTAGKL
TGLDRMGPKSAQNVVNALVKAKQTTFARFLYALGISEVGEATAANLAAHFGTLDALMAAD
LDALMAVQDVGKVVASHVRNFLDEESNLEIIRLLVDKAGVNWPQVMVVKAEEIDSPFAGK
TVVLTGSLSILSRDEAKDRLQALGAKVSGSVSKKTDLVVAGEAAGSKLAKARELGIDVID
EQEMIRLLGEKYGKKTPD
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggaatctgtgcaagacaaaatcacccatctgcgaaccctgcttcgccactatgaatat
cagtatcatgtgctggacgcaccggcagtgcccgatgcagaatacgatcgtctgatgggt
gaattgcgcgatttggaagcgcagcaccctgaactgctgacctccgactcaccaacccag
cgcgtaggtgcagcaccactgagtgttttcgagcaggtgcgccacgaagtgccgatgctg
tcgctggacaatgcctttgatgaagagagttatctggcatttaataagcgcgtgcaggat
cggctgaaaagcacggatgacatcaccttttgctgcgagctgaagctggatgggctggcg
gtcagcctgctgtatgaaaaaggcgagctggtacgggctgcgacccgaggtgatggcacc
acgggagaaaatattaccgctaatgtgcgcaccatccgggctattccgctgcgtttgagt
ggtgacaacattcctgagcgcctcgaagtgcgtggtgaagtttttatgccgctggtcgga
ttcgagcaaatgaatgagcaggcgcgtagcagcggtcaaaaggtgtttgctaatccgcgc
aatgccgccgccggttctctgcgacagcttgatccgcgtatcaccgcgaaacgtccgctc
actttcttctgctacggcctgggtctgctggaaggcggcgaaatgccgcgcagccatagg
gcgcgcctgcaacgttttaaagcctgggggctgccggtcagcgatcgtgtgcgcctttgc
cacagtccggcagaggtactggacttctaccaccaggttgaggcggctcgcccgacgctg
ggcttcgatattgatggcgtggtgattaaagtggacagcctggcgctgcaagagcagctg
ggctttgttgcgcgtgcaccacgttgggcagtcgcgtttaagtttcccgcgcaggagcag
atgacgacagtgcgtgatgtcgaatttcaggttggccgcaccggcgccattacgccggtt
gccaggctggaaccggtgctggttgccggggtcatggtgagtaatgccaccctgcataac
gccgatgaaatcgagcgactggggctgaaaatcggcgatcgtgtggttatccgccgggct
ggcgatgtcattccccaagtcatgagcgtggtggagacaggcgacaacgcgcgtgagatt
gcattcccgacacgctgcccggtatgcggctcggacgtcgaacgcgtcgaaggggaagtg
gtggcgcgctgcaccggtggtctgatttgcggcgcgcagcgtaaaggtgccttgaaacac
tttgtttctcgccgggcgctggatatcgacggtatgggtgagaaaattatcgatcagctg
gtggacaaagaatatgtcaaaaatccggcggagctgtttgaactgacggcaggcaagttg
accgggctggatcggatggggccgaaatcggcgcagaatgtggtgaacgcgctggtaaaa
gcgaagcaaaccacctttgcacggttcctttatgcgctgggcatcagtgaagtcggcgaa
gccactgcggcaaatctggcggctcattttggcacgctggacgcgctgatggcggccgat
ctggatgcgttaatggcggtgcaggacgtcggcaaagtggtcgccagccatgtgcgcaac
ttccttgacgaagagagtaaccttgagatcattcgcctgctggtggacaaggccggggta
aactggccgcaggtgatggtggttaaagcagaagagatcgacagtccgtttgccggtaaa
accgtggtgctgaccggttcactgagcatcctttcccgtgacgaagccaaagaccgtctg
caggcgctgggggcgaaggtcagcggcagcgtatcgaagaaaaccgatctggtcgttgcc
ggagaagccgcaggttccaaactggccaaagcccgggagctgggcattgatgtgatagat
gagcaggaaatgatacgtttactcggtgaaaagtatggaaaaaaaacacctgattga
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