Enterobacter quasiroggenkampii: OM418_15920
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Entry
OM418_15920 CDS
T09002
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
equ
Enterobacter quasiroggenkampii
Pathway
equ03030
DNA replication
equ03410
Base excision repair
equ03420
Nucleotide excision repair
equ03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
equ00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OM418_15920 (ligA)
03410 Base excision repair
OM418_15920 (ligA)
03420 Nucleotide excision repair
OM418_15920 (ligA)
03430 Mismatch repair
OM418_15920 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
equ03032
]
OM418_15920 (ligA)
03400 DNA repair and recombination proteins [BR:
equ03400
]
OM418_15920 (ligA)
Enzymes [BR:
equ01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OM418_15920 (ligA)
DNA replication proteins [BR:
equ03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OM418_15920 (ligA)
DNA repair and recombination proteins [BR:
equ03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OM418_15920 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OM418_15920 (ligA)
MMR (mismatch excision repair)
DNA ligase
OM418_15920 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OM418_15920 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
Nlig-Ia
DUF2229
DZR_2
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
WFC81504
UniProt:
A0ABY8DXK1
LinkDB
All DBs
Position
complement(3383266..3385281)
Genome browser
AA seq
671 aa
AA seq
DB search
MDSIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELITPDSPTQ
RVGAEPLGAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSSDALTWCCELKLDGLA
VSLLYENGVLVRAATRGDGTTGEDITTNVRTIRAIPLKLQGDNIPARLEVRGEVFLPQAG
FEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHL
GRLLQFKAWGLPVSNRVQLCDSPEAVLAFYHKVEEDRPTLGFDIDGVVIKVNSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIDRLGLRIGDKVVIRRAGDVIPQVVNVVESERPDDTREVVFPTHCPVCGSDVERVEG
EAVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFRLTAG
KLTGLDRMGPKSAQNVVNALEAAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEK
ASIEELQKVPDVGIVVATHVFNFFAEESNRNVIGELLEEGIKWPAPVVVNAEEIDSPFAG
KTVVLTGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVI
DEAEMMRLLGE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggactcaatcgaacaacaactcactgaactgcgaaccacgcttcgccatcatgaatat
ctctatcatgttatggacgcaccggaagtcccggatgcggagtatgaccgcctgatgcgc
gagctgcgggaattagaggcgcagcatccagaactcatcacgccggattcccccacccag
cgcgtcggcgcagagccgctgggggccttcagccaggtgcggcatgaagtgccaatgctg
tcgctggataacgtcttcgatgaagaaagcttcctcgcgtttaacaagcgcgtgcaggat
cgcctgaaaagcagcgacgcgctcacctggtgctgcgagctgaagctggatggcctggcc
gtcagccttctctatgaaaacggcgtgctggtgcgtgccgcgacgcgtggcgacggcacg
acgggtgaagacatcaccactaacgtgcgtaccatccgcgcgatcccgctgaagcttcag
ggtgacaacattcctgcgcgtctggaagtgcgcggcgaggtgttcctgccgcaggcgggc
ttcgagaaaattaacgaagaggcgcgtcgcaccggcgggaaagtgtttgctaacccgcgt
aacgcggcggcgggctcgctgcgtcagcttgacccgcgcatcactgcgaagcgaccgctt
actttcttctgctacggtgtcggtattctggagggcggcgagctgccggatacccatctc
gggcgtctgctgcagtttaaggcgtgggggctgccggtgagcaaccgagttcagctctgc
gactcgccggaagcggtactggcgttctaccacaaggtggaagaggatcgtccgacgctc
ggctttgatattgatggcgtggtcatcaaggtgaattcactggcgctgcaggagcagctg
ggcttcgtggcgcgcgcgccgcgctgggcggtggcgtttaagttcccagctcaggagcag
atgaccttcgtccgcgacgtggagttccaggtgggacgtacgggggccattaccccggtc
gcccgtctggagccggtgcaggtggcgggcgtgctggtgagtaacgccacgctgcataac
gccgatgaaatcgaccgcctgggcctgcgtattggtgacaaagtggtgattcgccgcgcg
ggggacgtgatcccgcaggtggttaacgttgtggagtcagaacgtcctgacgatacgcgc
gaggttgtcttcccaacccattgcccggtgtgtggctcggacgttgagcgtgtggaaggt
gaagccgtggcgcgctgtacggggggcttaatctgtggcgcacagcgtaaagagtcactg
aagcacttcgtttcccgtcgcgcaatggacgtggacggcatgggcgacaagattatcgat
cagctggttgaaaaagagtatgtccacacgccagcggacctcttcaggctgaccgcaggt
aaactgaccggtctggaccgtatggggccaaagtcagcccagaacgtggttaacgcgctg
gaagccgccaaagagaccacctttgcccgcttcctgtacgcgctgggcattcgtgaagtg
ggtgaagccacggctgcggggctggcggcgtattttggtacgctggaggcgctggaaaag
gcgagcatcgaggagctgcagaaagtcccggatgtcggcatcgtcgtcgccacgcacgtc
tttaacttctttgccgaagagagcaaccgtaacgtcatcggcgaactgctggaagagggc
attaaatggcccgcgccggtggtggtcaacgcagaagagatcgacagcccgttcgccggt
aaaacggtggtgctgaccggcagcctgagccagctttcacgcgacgacgccaaagcccgt
ctggtggcgctgggggcaaaagtggcgggcagcgtgtcgaagaaaaccgacctggtgatt
gccggagaagcggcgggttcgaagctggcgaaagcccaggagctcggcattgaggttatc
gacgaagcggaaatgatgcgtctgttaggagagtaa
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