Agathobacter rectalis M104/1: ERE_30980
Help
Entry
ERE_30980 CDS
T02588
Name
(GenBank) NAD-dependent DNA ligase (contains BRCT domain type II)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
era
Agathobacter rectalis M104/1
Pathway
era03030
DNA replication
era03410
Base excision repair
era03420
Nucleotide excision repair
era03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
era00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ERE_30980
03410 Base excision repair
ERE_30980
03420 Nucleotide excision repair
ERE_30980
03430 Mismatch repair
ERE_30980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
era03032
]
ERE_30980
03400 DNA repair and recombination proteins [BR:
era03400
]
ERE_30980
Enzymes [BR:
era01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ERE_30980
DNA replication proteins [BR:
era03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ERE_30980
DNA repair and recombination proteins [BR:
era03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ERE_30980
NER (nucleotide excision repair)
GGR (global genome repair) factors
ERE_30980
MMR (mismatch excision repair)
DNA ligase
ERE_30980
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ERE_30980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
PTCB-BRCT
HHH_2
BRCT_2
RUBY_RBDX
Nlig-Ia
Lar_restr_allev
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
CBK94878
LinkDB
All DBs
Position
3194946..3196916
Genome browser
AA seq
656 aa
AA seq
DB search
MENNKIKDKIDELVESLNRASKAYYNGADEIMPNYEWDAMFDELTQLEKETGYIRHDSPT
QNAGYEAEAGNREPHEYPALSLAKTKSIEELKKWAGDMPIWLSWKLDGLTLVLTYDGGRL
VKILTRGNGTVGSNITFLQDAISGFPKEIPYKGHMVVRGEATISYTDFKLLNDTIEDDDE
KYANPRNLASGTLNLDDVEEVKRRHVVFYAFTLVHIDDDIISWGDRMSYLSDMKFNVVKR
EATDAAGLDEAVKRWTRDVESGRMDVPVDGLVICYDDTAYAAGGSVTGHHATRAGFAFKW
QDEAVDTRLRYIEWSCAVSTISPVAVFEPVQIEGTTVSRASLCNLTEIERLGVGKECTLS
VIKANKIIPKCIAVKDAVGAVEIPKECPVCHHPTRIFVSKNSGVKTLHCTNPDCTAKNVK
KFSRFVSKSGMDIDGLSVQTMLKFINEGFIKQFPDIYHLPEHFDKISSMEGFGEKSCMNM
QTAIEKSRHVHPVNLIFALCIPLIGTDAGKKIVNAIGFDGFADRMRNATDFVDIDGIGQE
KSGSILEWYANPKNSAMFEALIKELDIEKVDIKDMSEGSLNGKTFVITGDVHDFANRSEF
KAYVESQGGKVTGSVSKKTDYLVNNDTESTSSKNKKAKELGIPIISEDTFIEMFGR
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atggagaataacaaaataaaagataagatagatgagcttgttgaaagtcttaaccgcgcg
tcaaaagcttactacaacggcgcagatgaaataatgccaaactacgagtgggatgcaatg
tttgatgagcttacacagcttgaaaaagagacaggatatatccgccatgacagtccgaca
cagaatgcaggctatgaggcagaggctggaaatcgtgagccgcatgagtatccggcactt
tcacttgccaagacaaagagcattgaggagcttaagaaatgggcaggtgatatgccaatc
tggctttcatggaagcttgacggactgacactcgtgctcacatatgacggtggcaggctt
gtgaaaatactgacgagaggaaatggaactgtaggaagtaacatcacctttttgcaggat
gccataagcggcttcccaaaggagataccatacaagggacatatggttgtaagaggggaa
gcgacaatttcctacacggattttaagctgttaaatgatacaatcgaggacgatgatgag
aaatatgccaatccaaggaaccttgcatccggtacattaaatctcgatgatgtggaagag
gtgaagcgcagacatgtagtgttttatgcgtttacactcgtgcatatagatgatgatatc
atatcatggggggatagaatgagctatcttagtgatatgaaattcaatgttgtcaaaagg
gaggcaacagatgcggcaggccttgatgaggctgtaaaacgctggacaagggatgtcgag
agtggcaggatggatgtgcctgtggacggacttgtcatatgctatgatgacactgcctac
gctgcaggcggaagcgtcacagggcatcatgctacgagagcaggttttgctttcaagtgg
caggatgaggctgtagatacgagacttcgttatattgaatggtcgtgtgcggtttcgaca
atatcgccggtggctgtttttgagccggtgcagatagagggtacgacggtttcgagagct
tcgctttgcaatctgactgagatagaaaggcttggagtgggaaaagagtgtacactttcc
gtgataaaagccaacaagattattccgaaatgcatagctgtaaaggatgcggtgggagca
gttgagataccgaaggaatgtccggtgtgtcatcatccgacacgcatatttgtaagtaaa
aacagcggtgtgaagacgctacattgcacaaaccctgactgtacagccaagaatgtcaaa
aagttttcaagatttgtcagcaaaagcggaatggatatagatggactttcggtacagaca
atgctaaaatttataaatgagggattcataaaacagttccctgacatataccatctgccc
gagcattttgataagataagcagcatggaaggatttggcgagaagtcgtgcatgaatatg
cagactgccatcgaaaaaagcagacatgtccatccggttaatctgatatttgcactctgt
atacctcttataggtaccgatgcaggcaagaagattgtcaacgcaataggttttgatggc
ttcgcggacaggatgagaaatgccactgactttgtggatatagacggcataggccaggaa
aagtcaggctccatacttgaatggtatgcaaatcccaaaaacagtgcgatgtttgaagca
ctgattaaggagcttgacatagaaaaggtcgatataaaggatatgtcggagggaagctta
aacggcaagacctttgttatcacaggcgatgtgcatgattttgccaacagaagcgagttt
aaggcctatgtggagtcacagggcggcaaggtgacaggaagcgtgtcaaaaaagacagac
tatctggtaaacaacgacactgaatctacttcatcaaaaaataaaaaagcaaaagaatta
ggaatacctatcatctcggaggatacatttatagagatgtttgggcgttag
DBGET
integrated database retrieval system
