Agathobacter rectalis M104/1: ERE_36110
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Entry
ERE_36110 CDS
T02588
Name
(GenBank) NAD-dependent DNA ligase (contains BRCT domain type II)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
era
Agathobacter rectalis M104/1
Pathway
era03030
DNA replication
era03410
Base excision repair
era03420
Nucleotide excision repair
era03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
era00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ERE_36110
03410 Base excision repair
ERE_36110
03420 Nucleotide excision repair
ERE_36110
03430 Mismatch repair
ERE_36110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
era03032
]
ERE_36110
03400 DNA repair and recombination proteins [BR:
era03400
]
ERE_36110
Enzymes [BR:
era01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ERE_36110
DNA replication proteins [BR:
era03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ERE_36110
DNA repair and recombination proteins [BR:
era03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ERE_36110
NER (nucleotide excision repair)
GGR (global genome repair) factors
ERE_36110
MMR (mismatch excision repair)
DNA ligase
ERE_36110
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ERE_36110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
PTCB-BRCT
BRCT_2
HHH_5
Nlig-Ia
HHH_2
Motif
Other DBs
NCBI-ProteinID:
CBK95341
LinkDB
All DBs
Position
3656197..3658326
Genome browser
AA seq
709 aa
AA seq
DB search
MDKTLRMKELVNKLNEASNAYYNGKDEIMSNHEWDTMFDQLAQLEEETGIILPDSPTSKV
GADEIGGNGLKKVRHEFPALSLDKTKDIYEFPKVFSKAASGDCVVMHKLDGCTLCLTYDG
SRNGGCGRLVQAVTRGNGEIGSDMTYQASYIEGIPMTIGFKGKLIVRGEALMTYSEFERI
NSNLEEGEEEYSNPRNLANSTITMKEPGLKGRKVIFKAFKLVYMEPAADDKIEVPATFFG
ALTLLERLGFGVVEHELARAYSSNPDVDSDLPDQIINVMNSFSDRVETLDYPVDGLVVAS
DDYKTADALPVTGHHPNRLTGFAFKWADECVETTLREIEWSPSRTGRINPVAVFDPVQLE
GTTVTRASVHNVSIVKKLRLRVGDKISVFKANKIIPCIDKNLTPGDELTYAESHACTCPV
CGMETSPMITHSGDRDVEVEMCTNPNCAVKQVKKFVHFCERDCMDIVGLSEKTLEKFIEK
GFIKQLADLYRLDTFERNIAAMDGFGQKSYDNIWKSIQISRKTTFVPFIHALGIPMVGKG
QAKLFDKAYKGNVKKFFNDVYNRKTFTDIDGIGEKIELSLWDWGSRYLGWIPFEKDLLDE
MRRTSCNTEVYDLLRWIDVEIPAEANVAGKDILSGKTFVITGSVNHFKNRAELQAKIEEL
GGKATGSVTKKTSYLINNDVESTSGKNKKAKELGVPIISEDEFLEMIGE
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atggacaaaacactaagaatgaaggaactggttaacaagttaaatgaagcatcaaatgcc
tactacaatggcaaagacgaaattatgtcaaaccatgaatgggatacaatgtttgatcag
cttgcacagcttgaggaagagacaggaattattctgccagattcacctacatcaaaagtt
ggtgcagatgagattggcggaaatggtcttaaaaaggtaagacatgagtttccggcactg
tcacttgataagacaaaggacatttacgaatttccaaaagtcttttcaaaagcggccagt
ggagactgtgttgtaatgcacaaactcgatggttgtacgctttgtttaacctatgatggt
agcagaaatggtggctgcggacgacttgtacaggccgtcactcgaggaaatggtgagatt
ggaagtgatatgacttatcaagcgtcttacatcgaaggtattcctatgaccataggtttc
aaaggaaaacttatagtaagaggagaagcgctgatgacctattcagaatttgaaagaatt
aattcaaatctggaagaaggtgaagaagaatattcaaatcctcgtaatcttgcaaattct
actatcactatgaaggaaccgggacttaaaggcagaaaggttatatttaaagcttttaag
cttgtttatatggagcctgctgctgatgacaagattgaggtaccggcaacattttttggc
gcactgacactgcttgagagacttggctttggtgttgtggagcatgaacttgcaagagct
tattcaagcaatccagatgtagattcagatttaccggatcagattatcaatgttatgaat
agtttctctgacagagtagagacactggattatcctgtagacggacttgtcgttgcatcg
gatgattataaaactgctgatgcacttcctgttacaggacatcatcctaacagactcaca
ggctttgctttcaagtgggcagatgagtgcgttgaaactactttgagagaaattgaatgg
tctcctagcagaacgggacgtattaatcctgttgcagtctttgatccggtacaacttgaa
ggcactacagttacaagagcgagcgtacataacgtatcaatcgtcaagaaactgcgtctg
agagtcggtgataagatttcagtgttcaaagcgaataagataattccatgtattgataag
aatctaacaccgggagatgaacttacttacgctgagtctcatgcatgtacatgtccggta
tgcggcatggaaacatcgccaatgattacacattctggtgacagagacgttgaagtagag
atgtgtacaaatcctaactgtgctgtaaagcaggttaagaaattcgtacatttctgcgag
agagactgcatggatattgtcggtctgtcagagaaaacccttgagaaattcattgaaaag
ggcttcattaagcagcttgcagatctgtacagacttgatacttttgagcgtaacattgct
gcaatggatggttttggacagaaatcatatgacaatatttggaaatcaattcagataagc
cgtaagacaacatttgtgccattcattcatgcgcttggcattcctatggtaggaaaagga
caggctaaactgttcgataaggcctataaaggtaatgtcaagaagtttttcaacgatgtt
tataatcgtaaaacttttacagatatagatggaattggagaaaaaattgagctcagtctc
tgggactggggcagcaggtatcttggatggattccatttgagaaggatttgctggatgag
atgcggagaacctcatgcaacactgaggtttatgacctgctcagatggattgatgtcgag
attccagcagaagcaaatgttgctggtaaagatattctttccggcaagacatttgtcatc
actggctcagtcaaccactttaagaaccgtgcagaactgcaggcaaaaattgaagaactg
ggcggtaaagcaactggatctgtaaccaaaaaaaccagctatcttattaataatgatgta
gaaagtacgtcaggaaagaataagaaagctaaggaacttggcgtgcctattatctctgaa
gatgaattccttgagatgataggagaataa
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