Erythrobacter sp. THAF29: FIU90_11160
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Entry
FIU90_11160 CDS
T06318
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
erf
Erythrobacter sp. THAF29
Pathway
erf03030
DNA replication
erf03410
Base excision repair
erf03420
Nucleotide excision repair
erf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
erf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FIU90_11160 (ligA)
03410 Base excision repair
FIU90_11160 (ligA)
03420 Nucleotide excision repair
FIU90_11160 (ligA)
03430 Mismatch repair
FIU90_11160 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
erf03032
]
FIU90_11160 (ligA)
03400 DNA repair and recombination proteins [BR:
erf03400
]
FIU90_11160 (ligA)
Enzymes [BR:
erf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FIU90_11160 (ligA)
DNA replication proteins [BR:
erf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FIU90_11160 (ligA)
DNA repair and recombination proteins [BR:
erf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FIU90_11160 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FIU90_11160 (ligA)
MMR (mismatch excision repair)
DNA ligase
FIU90_11160 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FIU90_11160 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
DNA_ligase_ZBD
BRCT
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
QFT78097
LinkDB
All DBs
Position
complement(2288195..2290267)
Genome browser
AA seq
690 aa
AA seq
DB search
MTEDITEAEAANELMRLAKAIAKHDRLYHAEDSPEISDPEYDALVRRYAELEARFLHLAP
KDSPLKRVGHSIAASPLSKVRHEVRMMSLDNAFSREEVEEWTQRVRRYLALDESVPLAIT
AEDKIDGLSCSLRYEKGELVRAATRGDGEVGEDVTANVAHIGDIPKRIPARGKAAMPDVF
ELRGEVYMSKADFAALNEAQEKAGGKLFANPRNAAAGSLRQKDPSVTARRPLKFWAYGWG
AASEVPRDTQYEMMRLIESWGFPVSPFLTLTHSVDEMIAHYDEIGRQRPDLGYEIDGVVY
KVDRLDYQQRLGFVAKAPRWALAHKFPAEQAETTLEAIDIQVGRTGKLTPVGRLAPVMVG
GVMVSNVTLHNRDEIERLGLRPGDRVLVQRAGDVIPQLVDNLTRDVEREPFVFPDHCPEC
GSEAVSEEGEVDVRCTGGLICPAQRTQRLEHFVSRKALDIDGFGSKTIAQFFALGWLESP
ADIFRLKERREDILALDGWQERSVDNLLKAVESRREPDAARLLFGLGIRHIGEVTARDLM
KHLHELPKLREVAERARKGDEDAILELTSIDGIGPSVVEALGDFFHEPKNVEVWEDLLSL
VNPPRYVVETLDSPVAGKTVVFTGKLETMSRDEAKAQAERLGAKAAGSVSAKTDLLVAGP
GAGSKLKKAQDLGIEVIDEAGWAEIVAAAV
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgacagaagacattaccgaagccgaagctgcgaatgaacttatgcgccttgccaaggcg
atcgcaaagcacgaccggctctatcacgccgaagactcgcccgagatttccgacccggaa
tacgatgcgctggtgcgccgctatgccgagctggaagcgcgctttctacatctcgcgccc
aaggattctccgctgaaaagggtcggccactcgatcgccgcctcgccgctgtccaaggtc
cgtcacgaggttcgcatgatgagcctcgacaacgcattttcgcgcgaggaggtcgaggaa
tggacccagcgcgtgcgccgctatctggcgctggatgaaagcgttccgctcgcgatcacc
gccgaggacaagatcgacggtctttcctgctcgctgcgttatgaaaagggcgaactggta
cgcgcggcgacgcgcggcgacggtgaggtgggcgaggacgtgaccgccaatgtcgcgcat
atcggcgacattccgaaacgcatcccggccagggggaaggccgccatgccagacgtgttc
gagttgcgcggcgaagtctacatgtcaaaggccgatttcgccgcgctcaacgaagcgcag
gaaaaggcgggcggcaagctgttcgccaatccgcgcaacgccgcggcgggatcgctgcgt
cagaaagacccgagcgtcaccgcccggcgcccgctcaaattctgggcctatggctggggc
gctgcctccgaggtgccgcgagacacgcaatacgagatgatgcgcctgatcgagagctgg
ggatttcccgtctcgccttttctgacgctgacccacagcgtagatgaaatgatcgcgcat
tacgacgaaatcggccgccagcgccccgatctcggctacgagatcgacggggtcgtctac
aaggtcgaccggctcgattaccagcagcgcctcggcttcgtggcgaaagcgccgcgctgg
gcgctcgcgcacaaattccccgcagaacaggcagagacgacgcttgaggcgatcgacatc
caggtcgggcgcaccggaaagctcactcccgtgggtcggctggcgccggtcatggtgggc
ggcgtgatggtctcgaacgtcacgctccacaaccgcgacgagatcgaacggcttggcctg
aggcccggcgaccgggtgttggtgcagcgtgcgggagatgtcattccacagcttgtggat
aacctcacccgcgatgtggagcgcgaacccttcgtctttcccgatcattgccccgaatgt
ggcagcgaggcggtttcggaagaaggcgaggtcgatgtgcgctgcactggcggtctcata
tgtccggcgcaacgcactcaaaggcttgaacatttcgtcagccgcaaggcgcttgatatc
gacgggttcgggtcgaagaccatcgcgcagttcttcgcgctggggtggctcgaaagccct
gccgatatcttccgcctgaaggagcgccgcgaggacatcctcgccctcgacggctggcag
gagcggtctgtggataacctgctcaaggctgtggaaagccggcgcgaacccgatgcggcg
cggctgctgttcggccttggtatacgccatatcggcgaggtaaccgcgcgcgacctgatg
aaacatctccacgagctgccgaaattgcgcgaagtggctgaaagggcacgcaaaggtgac
gaagatgcgatcttggaactcaccagtatcgacgggatcggccctagcgtagtcgaggcg
cttggtgactttttccacgagcccaagaatgtcgaggtgtgggaagacctgctgagcctg
gtgaaccctccgcgttacgtggtcgaaacgctggattcgccagtggccggcaagacggtc
gtgttcaccggcaagctagaaaccatgagccgcgatgaggcaaaagcgcaggccgaacgg
ttgggcgcgaaggctgctggcagtgtttctgccaagactgacctgctggtcgcgggaccg
ggtgcaggctcgaagctgaagaaagcgcaggacctgggcatcgaggtcatagacgaagca
ggctgggccgagatcgtggcggcagcggtttaa
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