Erwinia sp. Ejp617: EJP617_12190
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Entry
EJP617_12190 CDS
T01935
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
erj
Erwinia sp. Ejp617
Pathway
erj03030
DNA replication
erj03410
Base excision repair
erj03420
Nucleotide excision repair
erj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
erj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EJP617_12190 (ligB)
03410 Base excision repair
EJP617_12190 (ligB)
03420 Nucleotide excision repair
EJP617_12190 (ligB)
03430 Mismatch repair
EJP617_12190 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
erj03032
]
EJP617_12190 (ligB)
03400 DNA repair and recombination proteins [BR:
erj03400
]
EJP617_12190 (ligB)
Enzymes [BR:
erj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EJP617_12190 (ligB)
DNA replication proteins [BR:
erj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EJP617_12190 (ligB)
DNA repair and recombination proteins [BR:
erj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EJP617_12190 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EJP617_12190 (ligB)
MMR (mismatch excision repair)
DNA ligase
EJP617_12190 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EJP617_12190 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH
HHH_2
HHH_5
HHH_8
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
ADP10900
LinkDB
All DBs
Position
1349197..1350879
Genome browser
AA seq
560 aa
AA seq
DB search
MKCAILVVWMFSTLVQAQCPVWSASRADAEISALEAQLKKWDDAYYRRGESQIPDERYDT
LHGKLQQWQRCFSPASDLRQPLLKTDGKVLHPVSHTGVKKLSDKAAVARWMEKRDGLWIQ
PKVDGVAVTLLYRDGRLVQMISRGDGVKGEDWTAKARQIPAIPKSIPRFPAVQVFQGELY
LKMTDHQQATDGGKSARSIVAGALMAKAPSTMLQRVGIFVWAWPDGPNSIAQRLTGIRAL
GFPDISNWTHRVENVDEVEGWRERWFHQALPFATDGIVVHSIPTRQGTDWLPELGDWAIA
WKYPPPEVTSEVRSVEFAIGRTGRINAVLNLLPVQLDDKRVSRVNIGSIEHWKQTDVIAG
DLVSISLAGLGVPRMDKVIWRVKERVLPPLPDATHFNSLSCFRLTAQCRQQFLARLEWLS
SKPVLNLSGAGRQTWQQLIQAGSMAHIFSWLALSEEQLKAVPGIGEQRAHFFWQQFRLSR
QLPFKRWVKALGVPIPERAMNTLTDDNWQQLLSHSLQDWQQLPGVGQTLARKIFSYLRQQ
EVRQLIDVLEASVVLSLQGR
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgaaatgtgccattctggtcgtgtggatgttcagtaccctggtacaggcacagtgcccg
gtttggtctgcctcacgcgctgacgcagaaattagtgcacttgaggcgcagctaaaaaag
tgggatgacgcctattatcggcgtggagaatcccagatccctgatgagcgctacgatacc
ctgcacggcaaactgcaacagtggcagcgctgtttttctcctgccagcgatttgcgtcag
ccattgctcaaaactgacggtaaagttttgcatcctgtctcccatacgggcgttaaaaag
ctttcagataaagcagccgtggcgcgctggatggaaaagcgtgacgggctgtggattcaa
ccgaaggtggatggcgtggcagtgacgttactctaccgtgatggccggctggtgcagatg
atcagccggggagatggcgttaagggggaggactggacggcaaaagcccgtcagatcccc
gcgattccaaaatccattccacgcttcccggcagtgcaggtttttcagggggagctgtat
ctcaagatgaccgatcatcagcaggccaccgatggggggaaaagtgcgcgatctatcgtt
gcgggggcgctgatggcgaaagctccctcgacaatgctgcaacgtgttggaatatttgtt
tgggcatggccggatggaccaaactcaattgcccagcgcctgacggggatccgcgccctg
ggattccctgacatcagtaactggacccaccgggtagaaaatgtggatgaggttgagggc
tggcgtgaacgctggtttcaccaggccttaccgtttgccactgatggcattgttgttcac
agcattccgacaaggcaaggcactgactggctgcctgagctgggcgactgggctattgcc
tggaaatatcctccaccggaagtgacaagcgaagtacggtcagttgagtttgccatcggt
cgtaccggccgtattaatgccgtcttgaatctgctgccggtgcagcttgatgataaacgg
gttagccgggtcaacataggttcgattgaacattggaaacaaaccgatgtgatagcagga
gacctggtgagtatcagcctggctgggctgggcgttccacgtatggataaggttatatgg
cgggtaaaagaacgcgtccttccccctcttcccgatgccacacattttaacagcctgagc
tgttttcgcctgactgcgcaatgccgtcaacagtttctggcaaggctggagtggcttagc
agtaagccggtgcttaaccttagcggcgcgggtcggcaaacctggcagcagttgattcaa
gcgggcagcatggcgcatatattctcgtggctggctctgtcggaggaacagttaaaagcc
gtgccgggcatcggagaacaaagggcgcattttttctggcaacagttcaggttgagtcgc
caactcccttttaaacgctgggttaaagcattaggcgtgccgataccggaacgggccatg
aatacgctgacggacgataactggcaacagttgctgtcacatagcctacaggattggcaa
cagttgcccggagtaggccaaaccctggcccggaaaattttctcatacctccggcagcag
gaagtacgccagcttatagatgtattagaagcatccgtggttctgtctttgcagggaaga
taa
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